Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0828 ATGATTCTGGAGGACCAAAGCTGCGATTTGGGTGACGACAATGGAACCGCGAAAAAGTTTCCTGTAGGGATGAGTGTTCTGGCTGTTGACGACGACCCAATTTGTCTCAAAGTGCTGGAGACTCTGCTTGTCAAATGCGAGTATCAGGTTACTACAACTAATCAGGCGGTTAAGGCTTTGAAAATGCTAAGGGAAAACAGGAACAAGTTTGACCTCGTCATTAGTGATGTAAATATGCCAGACATGGATGGATTTAAGCTCCTTGAGCAAGTGGGACTTGAAATGGACCTACCAGTCATCATGTTGTCAGCACACAGTGATACAAGGCTTGTGATGAATGGTGTTACACATGGTGCATGTGACTATTTACTGAAACCTGTTAGAATGGAAGAACTTAAGAACATATGGCAACATGTGGTTCGAAGAAAGAAGTTTGATAACAAGGATCAGAATAAGGCTTCTTCTTCTTCTCAGGTGGAGAAGCCGAACAATATGGCGGATAGGGAAGGGAATCCAGCCATCAGTTCAGAAAATAATTCAGATCAAAGTAAAAAGCTGGGTAAAAGGAGGAAGGACCACGATGATGATGAGGAAGAAGCTGGTGAAGACAATGTACAAGAGAACGAGGAGGACCCATCGACACAGAAAAAGCCGCGTGTTGTTTGGTCACCGGAGCTGCACAGGAAATTTGTTGCAGCAGTTGATCAACTGGGACTTGAAAAAGCTGTTCCCAAGAAAATTCTTGACCTGATGGATGTTGAAGGGCTTACAAGGGAAAATGTGGCGAGCCATCTACAGAAATATAGGATCTATCTTATGAAGGCAACTCAACAGGTTAAAATTGCTGCTGCATTGGGTAGTGAATCATCGTACTTGCGGATGAATTCATTAGAGGGTTATGGAGAGTTTCGCGCTTTCTCTGATTCAGGACGGCTCTCATCAACATTTGCATCTACTGGATTTTTTAGCAGACTGAACTCTCCAGCTGGCTTGAACTTGAGAGGAATCGGTTCTTCTCGGCTGATCCAGTCCGGCCAGTCTCAAAACTCGAGCCTTCCCACAAATACACTTGGAAATCTTCAACCATCACCTATCTTGTCTGCAAACTCAAGTTTATTTCAAAGCATTCCAATACCAATAGAGCTGAGTCCATCTCAACCAAGCAACTTTGCCACTGGTATTCGGCCGTTTAGTTCAATTGACGATTCGGGTGGTTTTGGAGCTACTAGTGGATTCCTAGACAGTAAATCTACCATTGGCGGTGCAAACAGTTCTGTACCTTGCGTCTCAAGTAATCATTTGATGTTACAAGGAAGCTCACAGCAATCTCATAATGTGGGAGGATTTAGAAATCAATCTTCTTTCGGAGCTGATCCTTTGAACCCGGAAACTTCAGATATCTATGGTTCCAATTTGTTGGACTACACACGATGCAATGAAAGCTGGCAGGGCGCCGTTCAGTTACCTAGCGGCGTAAATGTTTCTTCCTCCAATACTTACATCAGTAACCACCCAGTTGATTTTTCTTCTTCTGTTCCACTGGAGGATTTTACAGGTGAACTACAATGTCAAGAAGGCCTAATTGGGAATGTGGTTCAGTCTTCAAGTTACACGTCAAGGCAGAACTGGGAACTACATAAGCAGGATTACAACCAAAACATGAACTTCAATTCCAATGCTGTGAATTCACTGGTTTCTTCTAATAGAATAATAACAAGTACCACCATGGGGCAGAGTTTGAATCAAAATAATTCAACATGCAGCAACAAGAAGGTGGATTCATCTTTCATGGACCCATTCAATGAGGCTACCCCATCAATCTCTCAGTTTAATGATGATGAGAGGTTCTCTTCAGATCTGAGATTCAAATCTTCTGATGCATACCAAGATGGTTTCATTCGGAATATCGGATATTTGGATGACATAATGGGTTCAATGGTTAAACGGTTTCATGAGGGCTATATAATGCAGGAGCAACACGAGATGATATTGATGGACGGAGAGACCCGATTCGACGCTTACCCGATTGGATCTTGAGAGAACCTTGAGAAGATTCTTCAGATTCCTGCCTACACCAGAAGCTTCCCAGAAACCAGAACACACAGTATGCAACAACGTTAA 2121 0.4295 MILEDQSCDLGDDNGTAKKFPVGMSVLAVDDDPICLKVLETLLVKCEYQVTTTNQAVKALKMLRENRNKFDLVISDVNMPDMDGFKLLEQVGLEMDLPVIMLSAHSDTRLVMNGVTHGACDYLLKPVRMEELKNIWQHVVRRKKFDNKDQNKASSSSQVEKPNNMADREGNPAISSENNSDQSKKLGKRRKDHDDDEEEAGEDNVQENEEDPSTQKKPRVVWSPELHRKFVAAVDQLGLEKAVPKKILDLMDVEGLTRENVASHLQKYRIYLMKATQQVKIAAALGSESSYLRMNSLEGYGEFRAFSDSGRLSSTFASTGFFSRLNSPAGLNLRGIGSSRLIQSGQSQNSSLPTNTLGNLQPSPILSANSSLFQSIPIPIELSPSQPSNFATGIRPFSSIDDSGGFGATSGFLDSKSTIGGANSSVPCVSSNHLMLQGSSQQSHNVGGFRNQSSFGADPLNPETSDIYGSNLLDYTRCNESWQGAVQLPSGVNVSSSNTYISNHPVDFSSSVPLEDFTGELQCQEGLIGNVVQSSSYTSRQNWELHKQDYNQNMNFNSNAVNSLVSSNRIITSTTMGQSLNQNNSTCSNKKVDSSFMDPFNEATPSISQFNDDERFSSDLRFKSSDAYQDGFIRNIGYLDDIMGSMVKRFHEGYIMQEQHEMILMDGETRFDAYPIGSXENLEKILQIPAYTRSFPETRTHSMQQR 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0828 706 MobiDBLite consensus disorder prediction 151 181 - -
Lele18g0828 706 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 381 IPR045279 GO:0009736
Lele18g0828 706 MobiDBLite consensus disorder prediction 439 461 - -
Lele18g0828 706 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Lele18g0828 706 CDD REC_typeB_ARR-like 26 140 - -
Lele18g0828 706 Gene3D - 24 161 - -
Lele18g0828 706 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 214 273 IPR017930 -
Lele18g0828 706 MobiDBLite consensus disorder prediction 146 220 - -
Lele18g0828 706 PIRSF RR_ARR_type-B 6 636 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lele18g0828 706 FunFam Two-component response regulator 213 276 - -
Lele18g0828 706 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Lele18g0828 706 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 217 270 IPR006447 GO:0003677
Lele18g0828 706 SUPERFAMILY Homeodomain-like 214 272 IPR009057 -
Lele18g0828 706 SMART REC_2 24 136 IPR001789 GO:0000160
Lele18g0828 706 Pfam Myb-like DNA-binding domain 219 269 IPR001005 -
Lele18g0828 706 SUPERFAMILY CheY-like 23 148 IPR011006 -
Lele18g0828 706 Gene3D - 213 275 - -
Lele18g0828 706 MobiDBLite consensus disorder prediction 182 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0828 Lele-ChrLele18 5202175 5206482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0828 19 389 Response Regulator Gene Family AT2G25180 51.020 4.60e-112 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lele18g0828 Response_reg 1.9e-24 CL0304