Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0825 ATGCAGGCAAGAGCACGAATCACTGAGGTGCATTTCTTGCCTTTTAATCCGGTGGATAAGCGCACTGCGATTTCTTATATTGATGGCAATAGTAATTGGCGTAGAAGCAGCAATGGTGCTCCAGAGCATGTGATCTTCTTCCTCTACGTATTATTGAACTGTGACCTTCAGGGAGAGGCTAGGAAAAAGGCCCACTCTGTGATTGACCAATATGCTGACCGTGGCCTACGTTCCTTGGCTGTTGCTCGCCAGAGAAGAGAAAAGAAAGTGAAGGAGATCCATGGGAGTTCTTGGGCTTATTGCCTCTCTTTGTTTCACCAAGGCATGATAGTGCAGAGACTTAATGTAAAGATGATCACTGGTGACCAACTTGCCATTGGAAAAGAAAACGGTCGTAGGCTTGGAATGGGAACCAACATTTATCCATCTTCTTCTTCACTCCTTGGTGATATCAAGGATCCTTCCATTGCTGCCATCCCATTGGATGAACTCATTGAGAAGGCTGATGGATTTGCTGGAGTTTTCCCAGAGCACAAGTATGAGGTTGTGAAGAGGTTGCAAGATGGGAATCACATTTGTGGAATGACTGGTGATGGCGTGAACGATGCGCCTACGCTTAAGAAGGCAGACATTGGTATTGCAGTGGCTGATGCAACAGATGCTGCTCGAGGCGCCTCGGACATTGTTTTGACAGAGCCAGGACTTAGTGTGATTGTAAGTGATGTTCTGATAAGCAGGACAATCTTCCAGATGATGAAGAACTACACAATCTATGCAGTTCTATCACAATCCAGTGTTAGACCATCCCCTTTACCTGATTCATGGAAGCTCAGAGAAATCTTTGCCACTGGTGTTGTTCTTGGAGCTTACATGGCCATTATGACTGTTCTTTTTCTACCTTATAGTGAAGAGCATCTTAACTCAGCGCCTTACCTTCAAGTGAGCATAATTAGTCAAGCACTCATCTTTGTCACGAGATCAAGAGGTTGGTCATTCTCAGAACGCCCTGGGGTAATGCTTGTTGGAGCATTCTTCGCTGCACAACTGGTGGCGACTCTCGTTGCTGTGTATGTTAGCTGGAAATTTGCCAAAATCCAAGGGAATGGTTGGAGATGGGCAGGAGTAAATAGTGTTATCACTTACATCCCTCTTGATCTTCTCAAGCTCATAATCCGTCTTGCATTGACTAAGGACACCATGATCCAAAACAAGGCTGCTTTCACAACAAAGAAGGATTATGGTAAGGGAGAGAGGGAGGCTCAATGTGTAATGGCTCAACGCTCACTCCATGGTCTTGATGCTCCAAGTGCTTCTAAGAACAATCACTATGATCTATCTGGTCTAGCCGAGCAGGCTAAAAAGTTAAGGGAGCTGCACACTCTCAAGGGACATGTTGAATCTGTGGCTAAGTTGAAGGGTCTTGACATTGATGCCACTAATCAGCACTACAGAGTGTAA 1458 0.4527 MQARARITEVHFLPFNPVDKRTAISYIDGNSNWRRSSNGAPEHVIFFLYVLLNCDLQGEARKKAHSVIDQYADRGLRSLAVARQRREKKVKEIHGSSWAYCLSLFHQGMIVQRLNVKMITGDQLAIGKENGRRLGMGTNIYPSSSSLLGDIKDPSIAAIPLDELIEKADGFAGVFPEHKYEVVKRLQDGNHICGMTGDGVNDAPTLKKADIGIAVADATDAARGASDIVLTEPGLSVIVSDVLISRTIFQMMKNYTIYAVLSQSSVRPSPLPDSWKLREIFATGVVLGAYMAIMTVLFLPYSEEHLNSAPYLQVSIISQALIFVTRSRGWSFSERPGVMLVGAFFAAQLVATLVAVYVSWKFAKIQGNGWRWAGVNSVITYIPLDLLKLIIRLALTKDTMIQNKAAFTTKKDYGKGEREAQCVMAQRSLHGLDAPSASKNNHYDLSGLAEQAKKLRELHTLKGHVESVAKLKGLDIDATNQHYRV 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0825 485 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 171 263 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele18g0825 485 FunFam Plasma membrane ATPase 106 244 - -
Lele18g0825 485 Gene3D - 106 233 IPR023214 -
Lele18g0825 485 SUPERFAMILY Calcium ATPase, transmembrane domain M 245 394 IPR023298 -
Lele18g0825 485 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 3 90 IPR023299 GO:0000166
Lele18g0825 485 Gene3D - 3 105 IPR023299 GO:0000166
Lele18g0825 485 SUPERFAMILY HAD-like 114 239 IPR036412 -
Lele18g0825 485 PRINTS P-type cation-transporting ATPase superfamily signature 112 122 - -
Lele18g0825 485 PRINTS P-type cation-transporting ATPase superfamily signature 196 215 - -
Lele18g0825 485 PRINTS P-type cation-transporting ATPase superfamily signature 219 231 - -
Lele18g0825 485 PANTHER CALCIUM-TRANSPORTING ATPASE 3 262 - -
Lele18g0825 485 Gene3D - 440 485 - -
Lele18g0825 485 Gene3D - 234 262 - -
Lele18g0825 485 Gene3D - 263 393 - -
Lele18g0825 485 PRINTS H+-transporting ATPase (proton pump) signature 64 82 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele18g0825 485 PRINTS H+-transporting ATPase (proton pump) signature 196 212 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele18g0825 485 PRINTS H+-transporting ATPase (proton pump) signature 227 252 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele18g0825 485 PRINTS H+-transporting ATPase (proton pump) signature 168 184 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele18g0825 485 Pfam haloacid dehalogenase-like hydrolase 163 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0825 Lele-ChrLele18 5163073 5167042 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0825 2 485 Primary Pumps ATPases AT3G42640 61.484 0.0 636