LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele18g0812	ATGGCTTTTCACGACCATCTACCTCAAGAACTAGCTTTTCAGCCCTTCACGGATGAGCAACAGTTAAGTCAAAACAGGGACATGCAGAGGATGATGCCGTTCTCCGTCGCCGCAGAAGCAGCCGGGGGAGGGCCGGCACCGACGTGGCTGGTGAATAGCGCGGGGTCGTCTCTCCGGCAGCAGAATTTCCTCCACTTGCAGTCGGACAGGGCCGATGATTTTCGGGGGAGTATGTTGCCGTCGTCGGAGAGAAGCAACGATCGAGACGGCGGCGATCGGAGCCGGGGCGACGGAAATTGTGAATCTGAGGATTTGGCAGAGTACAAAGCTGACATTTTGGGACATCCCCTTTACGACCAGCTCTTGTCTGCTCACGTGTCGTGTTTAAGGATTGCCACTCCGGTGGACCAACTTCCTAGAATCGACGCCCAGCTTCAACAGTCACAGCGCGTGCTTGAAAAATACTCTGGTATTGGAAATGGTGTTGTTGATGAGAAGGACCTTGACCAGTTCATGACGCAGTATGTCCTATTGCTATGTGCTTTCAAAGAACAACTTCAACAACATGTCCGAGTTCATGCCATGGAAGCTGTCATGGCTTGTTGGGAGCTTGAGCAATCTCTTCAGAGCTTGACTGGTGTGTCTCCGGGAGAAGGGACAGGAGCAACAATGTCGGACGATGAAGATGAGCAGGAAGAGAGCAATGCTAACCTCTACGAAGGTGGCCTTGATGCTGCTGACAGCCTCGGATTTGGTCCTCTCGTTCCCACTGAAACTGAAAGATCTTTGATGGAGCGTGTCAGACAAGAATTGAAGCATGAATTAAAGCAGGGTTACAAGGAGAAGATTGTGGATGTACGAGAAGAGATTCTGAGAAAGAGGCGTGCCGGGAAGCTGCCCGGCGACACAACCTCGCTTTTGAAAGCTTGGTGGCAATCACATTCTAAATGGCCTTATCCTACTGAGGAAGACAAGGCAAGGTTGGTGCAGGAAACAGGATTACAACTAAAGCAAATAAATAACTGGTTTATTAATCAAAGGAAAAGGAATTGGCACACTAATCCTTCATCTTCTACCTCCTCTAAGAGCAAGCGCAAGAGTAGCAATGCAGGAGAAAGCAGTAACCAGAGCTTTATGTGA	1140	0.4982	MAFHDHLPQELAFQPFTDEQQLSQNRDMQRMMPFSVAAEAAGGGPAPTWLVNSAGSSLRQQNFLHLQSDRADDFRGSMLPSSERSNDRDGGDRSRGDGNCESEDLAEYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVLEKYSGIGNGVVDEKDLDQFMTQYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSDDEDEQEESNANLYEGGLDAADSLGFGPLVPTETERSLMERVRQELKHELKQGYKEKIVDVREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSTSSKSKRKSSNAGESSNQSFM	379

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele18g0812	379	MobiDBLite	consensus disorder prediction	212	235	-	-
	Lele18g0812	379	SMART	ELK_2	270	291	IPR005539	GO:0003677
	Lele18g0812	379	MobiDBLite	consensus disorder prediction	347	379	-	-
	Lele18g0812	379	Pfam	Homeobox KN domain	310	349	IPR008422	GO:0003677\|GO:0006355
	Lele18g0812	379	CDD	homeodomain	293	354	IPR001356	GO:0003677
	Lele18g0812	379	MobiDBLite	consensus disorder prediction	69	101	-	-
	Lele18g0812	379	SMART	KNOX2_2	158	213	IPR005541	GO:0003677\|GO:0005634
	Lele18g0812	379	Gene3D	-	296	374	-	-
	Lele18g0812	379	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	111	369	-	-
	Lele18g0812	379	SMART	KNOX1_2	106	150	IPR005540	GO:0003677\|GO:0005634
	Lele18g0812	379	SMART	HOX_1	292	357	IPR001356	GO:0003677
	Lele18g0812	379	Pfam	ELK domain	270	291	IPR005539	GO:0003677
	Lele18g0812	379	ProSiteProfiles	'Homeobox' domain profile.	290	353	IPR001356	GO:0003677
	Lele18g0812	379	ProSiteProfiles	ELK domain profile.	270	290	IPR005539	GO:0003677
	Lele18g0812	379	SUPERFAMILY	Homeodomain-like	292	357	IPR009057	-
	Lele18g0812	379	FunFam	homeobox protein knotted-1-like 3 isoform X1	291	352	-	-
	Lele18g0812	379	MobiDBLite	consensus disorder prediction	85	101	-	-
	Lele18g0812	379	Pfam	KNOX1 domain	108	149	IPR005540	GO:0003677\|GO:0005634
	Lele18g0812	379	Pfam	KNOX2 domain	163	212	IPR005541	GO:0003677\|GO:0005634

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele18g0812	Lele-ChrLele18	5096088	5099762	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele18g0812	1	366	Homeobox Transcription Factor Family	AT5G25220	61.268	4.19e-169	477

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-KNOX	Lele18g0812		KNOX2	1.8e-18	No_clan

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele18g0812	18	5096088	5099762	Lele18g0812	18	5096088	5099762	ECH
	Lele18g0812	18	5096088	5099762	Lele19g0847	19	5122577	5126099	hybridization
	Lele18g0812	18	5096088	5099762	Lele20g0611	20	13432102	13435829	hybridization