Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0808 ATGGGTTCCACCAACAGTAGACTTCGGTCTCGCTCTTCCACCCCACGAGTCAATGGCACTAACCGCTTCAGATTCTCCTCCCTTATCTGCGGTGGCTCCGCCTCCCGTTTCACTTATGAGATGGAAGATCAACCAACTGAACTTCAGAGAGATTCTGCAACAGAATTTAATGATGAAAATCAGAAAGTTGTTGAGGAGTCATCTATATCATCTACAGAAGCTAGAATTGGTTGCAGCCCCCATACTGAAACTGCAAGCTCATTGGATACTAGAACTGAGTTGAGTGAGATTTCAACTGTTGAAGGTTCCTCCAGAAGTGTTTCAACTAGTTGTCAAACAAAGTACTTGTCTGAAAGTAAGGAGCTAGTTCCTCCTCATCAGGTAAGTGTTGATCATAGTTATGATGAATCTTATAGGGATAGTAGCAACACAGCCAGTACTTCATTTGTAGAACAGCAGTCTTCAGATCCAGTCTCTGTAAATGTTTCTGCTAACAAAGATGCAGTCAATAATATTGTTGGTTCAGTGGATAGTGGTGTTTCTCAAATATCTCGCGAGACAATGTATCCGAGGAGGTCAACCTCTCATGAGCAAGGAGATTCCTATGCCAATGATATTTCTATCGAGAATCATACACATTCAGCTGTACCTATCCATAATTCTGAATTGGATCATGTTGCTCAAGTTTCCAATTTACCCGCAACTTCTGAGTTGCCTGAAAATGAAACCCGTCAGGACACAATACCTTCAGGTTTAGGTTTTCTTGTCTCCAATAGGGAAAGAGGACAGGGAAATGATAGTATGTTTCAAGTTGATGTGGTCGCAATACCTTCCAATGTTTTGTCTGGTGGCAATGATGATGTTAGTGATCATGATGCTAGAAGGGATAGTAGAAGACTATTCTGGGATGCTTTTTCAAGACGTAGTTCCAGAAGATTTGGTGATTCTCGAACCTTTGTCTTCTCAGCTAGTGATGTTGATGATCCAAGTTCTCAAGATCAATGGCTTCTTGATTTGAGTAATAATTCCTCAAATGATGGGGTTGGAGGTGATTCTGGATATTTGGGCAGTAGGATTCATAGATTGAACGAGCGGATGAGGCACTCAAGATCTGAGATCTGGGAAAGACTTCGTGGTGGCCTTGATGAGATTGGTCGGTTGAATCCTTCTTGTCCATTAGGACTCCACCCTGATGGCATGTGTTCATGCGAGTCTTTTCAGATGGCTGAGGAGTCCAGTACTCGTGCTAGTATATCAAGAATAGCTATGCTTGCTGAAGCTCTGTTTGAGGTCTTGGATGAAATCCATCGCCAACCTGTATCACTTGCCCTCTCCATGGTCTCTCTTCCAGCACCAGAATCAATCGTAGACTCTTTCCCTCTCAAGTGTCACAAAAAGATTGACAGAGCTGATAATGGCAATGATGCTGAACAATGTTACATATGCTTGGCTGAGTATGAGGAAGGAGACAAAATACGCGTTCTTCCATGCAACCATGAGTACCACATGTCATGTGTTGATAAGTGGCTTAAAGAAATACATGGTGTATGCCCCCTTTGTCGTGGGAATGTTTGTGGAGGGTCCAACGAGTCTTCTGCCTCAAACCCAGAAGTTGCTAACCGGTGCTGGAGGCTTTACAGTAAAAAGAAAAGGGAATGGTTGTCCATCACCAGGGATAATACTGCCATTTAG 1692 0.4303 MGSTNSRLRSRSSTPRVNGTNRFRFSSLICGGSASRFTYEMEDQPTELQRDSATEFNDENQKVVEESSISSTEARIGCSPHTETASSLDTRTELSEISTVEGSSRSVSTSCQTKYLSESKELVPPHQVSVDHSYDESYRDSSNTASTSFVEQQSSDPVSVNVSANKDAVNNIVGSVDSGVSQISRETMYPRRSTSHEQGDSYANDISIENHTHSAVPIHNSELDHVAQVSNLPATSELPENETRQDTIPSGLGFLVSNRERGQGNDSMFQVDVVAIPSNVLSGGNDDVSDHDARRDSRRLFWDAFSRRSSRRFGDSRTFVFSASDVDDPSSQDQWLLDLSNNSSNDGVGGDSGYLGSRIHRLNERMRHSRSEIWERLRGGLDEIGRLNPSCPLGLHPDGMCSCESFQMAEESSTRASISRIAMLAEALFEVLDEIHRQPVSLALSMVSLPAPESIVDSFPLKCHKKIDRADNGNDAEQCYICLAEYEEGDKIRVLPCNHEYHMSCVDKWLKEIHGVCPLCRGNVCGGSNESSASNPEVANRCWRLYSKKKREWLSITRDNTAI 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0808 563 SMART ring_2 479 520 IPR001841 -
Lele18g0808 563 MobiDBLite consensus disorder prediction 63 117 - -
Lele18g0808 563 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 456 527 IPR013083 -
Lele18g0808 563 MobiDBLite consensus disorder prediction 139 159 - -
Lele18g0808 563 SUPERFAMILY RING/U-box 470 524 - -
Lele18g0808 563 ProSiteProfiles Zinc finger RING-type profile. 479 521 IPR001841 -
Lele18g0808 563 MobiDBLite consensus disorder prediction 53 159 - -
Lele18g0808 563 FunFam Putative RING zinc finger domain superfamily protein 446 526 - -
Lele18g0808 563 Pfam Ring finger domain 478 521 IPR001841 -
Lele18g0808 563 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 539 - -
Lele18g0808 563 MobiDBLite consensus disorder prediction 1 20 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0808 Lele-ChrLele18 5079578 5083461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0808 390 525 C3H Transcription Factor Family AT5G45290 52.318 4.54e-41 154