Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0803 ATGGCAAGTAATGGCGCTGAAAAGATCCCTATCAATAATGACACTGAAGGTTCAGAAACGGCCATTGAGATAAAGATTAAAACATTGGACTCGCAAATTTATACTCTCAAAGTGGATAAACAGATGCCAGTTCCTGCTTTGAAGCAACAGATTGCTTCTGTAACTGGAGTGTTGTCAGAGCGGCAGCGCTTAATTTGTCGAGGAAAAGTTCTAAAGGATGATCAACTCCTTTCTTCCTACCATGTTGAAGATGGTCATACCTTGCATATGGTTGTGAGGCAACCTGATCTACCTGGAAGTTTGCCCAATCAATCAGCAACTGACCCACATTCAAGCACAAACAATAGTCACAGTAATCAAATAGCTCCTGGCGTTTTTATTGAAACTTTTAATGTGCCTGTTCAGGGAGATGGAGTTCCTCCAGAAGTTAATAGGATCATTTCCGCTATTCTAGGGTCTATTGGAATTTCAAATTTTCCAAGTGGCAGTGAAGGGATTGATGTCAGGGAACATGATACCCGAGGGCTAGGGAGAACATCAGGTTCTAGTGGTATATCAGATTCATTTCATCCTCAACCTGAACAAGCTGGTTTGTGGAATTCATCTGATAGATCACGCAATATATTTGGACTTCCAACAGCAGCTTCTTCTTTGGGATCATTACAGCCTCCTGTCATTCCTGATTCTTTGACAACTTTGTCTCAGTACGTGAGTCATCTAAGGCATGAATTTGAAGCCATTGTGAGAGAAGGGGGAAATAGTACCCAAGCAGCTGAGGCTAATAGAAATGAAGCATCGATTTCTTCTTCACCTTCAGGTTCTACACCAGAAGGGCTTTTGTCACCTGCATACTTGGCGGAAGTCTTGCATTCTACCAGACGGATGTTCATTGAACAGGCTAATGAGTGCTTATTTCAACTTGCAACACAGCTTGAGAGTCAAGGAAATGTAACAGATCCCTTGTTGAGGTCAAACACTCAGTCTAGGGCTTGGAGGACTGGAGTTCTGTTTTACAATCTTGGTGCGCTTCTACTCGAGCTTGGTCGTACAACCATGGCATTACTTCCTTTGCAGTCTGAAGCTGTAGCTAATGGCGGACCCGCAGTTTTTATATCCTCGTCGGGTCCTAACCATATCATGGTTCAGCCTCTTCCTTTTCAACCTGGAGCAAGCTTTGGTTCTGCCCCTGTTGGAGCTGTGCAGTCCCCCTCTGGTTTAGGTGGTGGACTTGGTTCAAGTTTTTTCCCAAGGCGTATAGATATTCAGATACGGCGAGGTACATCGACATCCTCAGCTAATGCCAACAGAGAAGAACATGGCGATACAACACAATCTGCCTCAGTACAAAGAAATCCTGTTGAAATTTCTGTCAATCAAACAAGCTCGAGACTTCCAGAGGATTTATCTTTTGGTGAAGAGTCAGGAGTACGGATAGTGCCAGTTAGAACCATGGCTGCAGCAGTACCTAGCCACCCAGGTCGCAACCCTTCAGAGTCTTCTGCTAATTCTATAGGGCTTTACTATCCTGTTATTGGGAGATTTCAGCATGCACCTTCTGAACATGGGAATAGTGAATCAGGATCTCAACCTGCCAGTCAGCATCACGCTTCTGATTTTCATGCAGTGCAACAGCCAACACCTGAATCTACTGGGCAAAGGCAAAGCATGGATGATCCTACAAGAAATGGTTCTTCATCGACTCCTAGCTTAAGGCAAGAGCCATCTTGTACCCGCAGGGTGAACATCAATATTCTGACAGCTGGTGGACTCCAGAACGACCAAGAATCCGAGAGGCAGATACCCAATAATGTACTTCAGTTTATAAGAGCACCTTTTCCTGGCGGTGAAATTCATGTCGAAGATTCTAGTTCACAAGGAACCACAGGTGGTACTACCTTAGATCTTGCTGGAACATCAACAGGCGGTGCCCGTGCCCCTGAGTCAGAGCCCAGAGCTAGTGAGGAAGGAATATTTTTGTCTAATATACTCCGTGAGGTCATGCCCCTCATATCACAAGTAGGGTCTGGGACGCATGGAACTCTGCAAGGTGAAAATGCTTCAGACAATCAAACAGCTTCCTCTGATTCTTCCACCCAGGTTGGGGGATCACGCAGACAAAGTGATTCTGATCCATGA 2136 0.4499 MASNGAEKIPINNDTEGSETAIEIKIKTLDSQIYTLKVDKQMPVPALKQQIASVTGVLSERQRLICRGKVLKDDQLLSSYHVEDGHTLHMVVRQPDLPGSLPNQSATDPHSSTNNSHSNQIAPGVFIETFNVPVQGDGVPPEVNRIISAILGSIGISNFPSGSEGIDVREHDTRGLGRTSGSSGISDSFHPQPEQAGLWNSSDRSRNIFGLPTAASSLGSLQPPVIPDSLTTLSQYVSHLRHEFEAIVREGGNSTQAAEANRNEASISSSPSGSTPEGLLSPAYLAEVLHSTRRMFIEQANECLFQLATQLESQGNVTDPLLRSNTQSRAWRTGVLFYNLGALLLELGRTTMALLPLQSEAVANGGPAVFISSSGPNHIMVQPLPFQPGASFGSAPVGAVQSPSGLGGGLGSSFFPRRIDIQIRRGTSTSSANANREEHGDTTQSASVQRNPVEISVNQTSSRLPEDLSFGEESGVRIVPVRTMAAAVPSHPGRNPSESSANSIGLYYPVIGRFQHAPSEHGNSESGSQPASQHHASDFHAVQQPTPESTGQRQSMDDPTRNGSSSTPSLRQEPSCTRRVNINILTAGGLQNDQESERQIPNNVLQFIRAPFPGGEIHVEDSSSQGTTGGTTLDLAGTSTGGARAPESEPRASEEGIFLSNILREVMPLISQVGSGTHGTLQGENASDNQTASSDSSTQVGGSRRQSDSDP 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0803 711 Gene3D - 15 120 - -
Lele18g0803 711 MobiDBLite consensus disorder prediction 98 120 - -
Lele18g0803 711 MobiDBLite consensus disorder prediction 519 577 - -
Lele18g0803 711 MobiDBLite consensus disorder prediction 516 577 - -
Lele18g0803 711 MobiDBLite consensus disorder prediction 177 203 - -
Lele18g0803 711 MobiDBLite consensus disorder prediction 175 203 - -
Lele18g0803 711 MobiDBLite consensus disorder prediction 620 638 - -
Lele18g0803 711 MobiDBLite consensus disorder prediction 254 277 - -
Lele18g0803 711 PRINTS Ubiquitin signature 32 52 IPR019956 -
Lele18g0803 711 PRINTS Ubiquitin signature 74 95 IPR019956 -
Lele18g0803 711 PRINTS Ubiquitin signature 53 73 IPR019956 -
Lele18g0803 711 MobiDBLite consensus disorder prediction 673 711 - -
Lele18g0803 711 MobiDBLite consensus disorder prediction 253 278 - -
Lele18g0803 711 CDD Ubl_ubiquitin_like 24 91 - -
Lele18g0803 711 MobiDBLite consensus disorder prediction 425 451 - -
Lele18g0803 711 SMART ubq_7 22 93 IPR000626 GO:0005515
Lele18g0803 711 Pfam Ubiquitin family 24 94 IPR000626 GO:0005515
Lele18g0803 711 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 11 696 - -
Lele18g0803 711 FunFam Large proline-rich protein BAG6 14 107 - -
Lele18g0803 711 SUPERFAMILY Ubiquitin-like 17 100 IPR029071 -
Lele18g0803 711 MobiDBLite consensus disorder prediction 618 653 - -
Lele18g0803 711 MobiDBLite consensus disorder prediction 94 120 - -
Lele18g0803 711 ProSiteProfiles Ubiquitin domain profile. 22 97 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0803 Lele-ChrLele18 5034121 5040016 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0803 22 93 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 34.722 2.74e-08 51.2