Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0790 ATGAAGAAGAACGCCTTCATCTCGTCCCTGTTTGGGTTTACGTTGGGGGCCCACACAGGTTCGCTGGCTACGCTTTGCTTCGGTCTGGTGCTTCTTGCAGGCTCTAATGCTTCGGTAGGAATTCCATACCAAGAGTGTGGGCCCCACACAAAAAGAATCTCAGTGGCCGTTCTTCTGACTACTAGAGGACAAGCTAATTGGTGTCACGAACCAGAACTTTCAAGAGTTCCAAGTTTGTGTATGCGCTTTAGTTGGAAATTATCTTTATTGCTTGGTGAGATGGGACTCGACCTGTACCCGAAGGCGATTGATGAATGCAACTTAGCTCTTGAAGTTACTCCAAAGTACAGTAAAGCCCTTTTGAAGAGGGCACGGTGCTATGAGGCTTTAAATAGGCTGGATTTAGCTCTGATAGATGCTAGTACTGTGCTGAAGAAGGAACCAAACAATATTATGGCACTGGAAATTTTGGAGGAGGTGAAGAATGCACTCTTGGACAAGGGATTGACAGCATCTGACATAGCAATATTATTGCCTTCTGATCATGCTGAATCTCCTTGTGTGCCTCCAAAAGTAGTAAAAGAGAAGAAACACGAGAGCAAAAAGGTTGAGTCAGTGACTGTTGAACAGCCCGCTGAGGTGAAGTTGGAAGACAAGAAGGTTGAGGACAGTGTTGAGCAGAAGAAGGCTGTGAAGAAGTCAAAAGAGAAGTTGGAAGACAAGAAGGAAGAGGACAGTGTTGAGCAGAAGAAGACTGTGAAAAAGTCCAAAGAGAAGTTGGAAGACAAGAAGGCAGAGGACAGTGTTGAGCAGAAGAAGGCTGTGAAAAAATCAGAGGAGAAGTTGGAAGACAATAAGGCAGAGGACAGTGTTGAGAAGAAGAAGGCTGTGAAAAAATCTGAAGAGAAGCTGGAAGACAAGAAGGTGGAGGACGGTATTGAGCAGAAGAAGGCTGTGAACAAATCCAAAAAGAAGGCAGCGAAGGAAAAGATTAATGAGAAGGCTGATATAAAGGAGGTTATTGAGGAAAAATTTGATAGTAGAAAGGAAGATGCAGCCAAGAAAACGGTGAAACTTGTGTTTGGTGAGGACATTAGATTTGCAGAATTGCAAGTAAATTGCAGCCTCCAGCATCTAAGGGAAGTTGTCAGCGAGCGATTTCCAAGTGCAGGAGCAGTTCTTGTCAAATACAGGGATCAAGAAGGTGATTTAGTCCCAATCACTTCTGATGAAGAATTGAGATGGGCTCAAACATCAGCAGGATCAGAGAGTTCTATCCGCCTATACATAGTGGATACTGACCCTGAGCAGGATCCATTGTTTGAGAAAATTAATAAAAAGAAGCCAGTCATTAATAATAATGCACTTAAGAGAGAAAAGGAAAGAAAAGGAAAGGAAATGATTAGATCATCATCTTGCATTGAGGATTGGATAATCCAGTTTGCTCAACTGTTCAAGAACTATGTTGGAATTGAATCTGACAGGTATTTACATTTTCATGAACTTGGAATGAAACTCTATTCTGAAGCTATGGAGGAGACAGTTACTAGTGAAGAAGCACAAAGCCTGTTTGACATGGCAGGAGCTAAGTTCCAAGAAATGGCCGCATTAGCGTTGTTCAACTGGGGAAATGTTCACATGTCCAGGGCAAGGAAGAAAGTGAACTTCACAGAAGAATCTTCTAAAGAGAATTTGCGTGAACAGTTAAAGAATTCATATGAATGGGTGCAGCAAGAATATAGAAGAGGGGGAGAAAAATATGAAGCAGCCATTAAAATCAAACCCGATTTTTATGAAGGCTTCCTGGCACTAGGGCAACAGCAATTTGAGCAAGCAAAACTTTCTTGGTATTATGCAATTAACACAAATATTGACTTGGCAATATGGCAAATTTACAACAATGCTGAGGAAAACATGGAGAAAGGAATGCAGATATGGGAAGAATCTGAAAAGAAATGCTTGAATGAAGAAGATTCTAAATCAAAGGATATCGAATTTCATTTACAGAACATGGGATTGGATTACCTATTGCAAAATATATCATCAGAAGAAATAGCAGCTCGGGCAGCAACTTTGAGGTCTCAAATAAATATCCTTTTCGGCACCATGCTATATGAGCGTTCAATTATGGAATTCAAATTAGGTTTACCAGTATGGCATGCATGTCTGGAAGTTGCAATTGAGAAGTTTGAACTTGCTGGAGCTTCTCCAAAAGATCTAGCTGTAATGGTGAAGAAACACTGTTCAAATAATACTTCTGTTGACGGTCTAGGATTCAACATTGATGAAATAGTACAAGCATGGAATGACATAAAAGAAGCTAGAAGGTGTGGAGTAAAATTTTATAGACATAGAAAGGAGCTATTCTTTGCGCTGCACATAGATATTCCATTTCCAAGAACGGAGAGTTCTTGGTCTTGCATTACATTGGAGTTATAG 2439 0.4084 MKKNAFISSLFGFTLGAHTGSLATLCFGLVLLAGSNASVGIPYQECGPHTKRISVAVLLTTRGQANWCHEPELSRVPSLCMRFSWKLSLLLGEMGLDLYPKAIDECNLALEVTPKYSKALLKRARCYEALNRLDLALIDASTVLKKEPNNIMALEILEEVKNALLDKGLTASDIAILLPSDHAESPCVPPKVVKEKKHESKKVESVTVEQPAEVKLEDKKVEDSVEQKKAVKKSKEKLEDKKEEDSVEQKKTVKKSKEKLEDKKAEDSVEQKKAVKKSEEKLEDNKAEDSVEKKKAVKKSEEKLEDKKVEDGIEQKKAVNKSKKKAAKEKINEKADIKEVIEEKFDSRKEDAAKKTVKLVFGEDIRFAELQVNCSLQHLREVVSERFPSAGAVLVKYRDQEGDLVPITSDEELRWAQTSAGSESSIRLYIVDTDPEQDPLFEKINKKKPVINNNALKREKERKGKEMIRSSSCIEDWIIQFAQLFKNYVGIESDRYLHFHELGMKLYSEAMEETVTSEEAQSLFDMAGAKFQEMAALALFNWGNVHMSRARKKVNFTEESSKENLREQLKNSYEWVQQEYRRGGEKYEAAIKIKPDFYEGFLALGQQQFEQAKLSWYYAINTNIDLAIWQIYNNAEENMEKGMQIWEESEKKCLNEEDSKSKDIEFHLQNMGLDYLLQNISSEEIAARAATLRSQINILFGTMLYERSIMEFKLGLPVWHACLEVAIEKFELAGASPKDLAVMVKKHCSNNTSVDGLGFNIDEIVQAWNDIKEARRCGVKFYRHRKELFFALHIDIPFPRTESSWSCITLEL 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0790 812 PANTHER PROTEIN CLMP1 255 784 IPR044517 -
Lele18g0790 812 SMART PB1_new 354 433 IPR000270 GO:0005515
Lele18g0790 812 SMART tpr_5 117 150 IPR019734 GO:0005515
Lele18g0790 812 ProSiteProfiles PB1 domain profile. 354 433 IPR000270 GO:0005515
Lele18g0790 812 MobiDBLite consensus disorder prediction 220 308 - -
Lele18g0790 812 Coils Coil 323 344 - -
Lele18g0790 812 SUPERFAMILY CAD & PB1 domains 355 443 - -
Lele18g0790 812 SUPERFAMILY TPR-like 96 611 IPR011990 GO:0005515
Lele18g0790 812 Gene3D - 353 436 - -
Lele18g0790 812 Coils Coil 221 288 - -
Lele18g0790 812 CDD PB1 356 430 - -
Lele18g0790 812 Gene3D Tetratricopeptide repeat domain 55 172 IPR011990 GO:0005515
Lele18g0790 812 Pfam PB1 domain 356 432 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0790 Lele-ChrLele18 4955247 4959336 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele18g0790 18 4955247 4959336 Lele18g0790 18 4955247 4959336 ECH
Lele18g0790 18 4955247 4959336 Lele19g0827 19 4991380 4994961 hybridization
Lele18g0790 18 4955247 4959336 Lele20g0630 20 13549454 13551785 hybridization