Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0725 ATGAGTTTTCCCGATCATCACCCTGGCTTCATGCTGTCGCCGTTACCATTTGCGGCGGATGACGATGCCAATGGAAGGTGCCCGCAATTCCCAATGAACAACGAATTTTTCGATTCACATTCAACATTTGATCAGCTTCCTCCGTTCAAGAGGCCCAGAACATCCGAAAGCAATCACTTCGATCCCTCGCCATTCCCGCCGCCCATGAATTCCTGGATGCTCCACCCGCAAAATCCTCCAACAAACAGACGAACGAGCCACATTTTTTATAAGACTCGCCTGTGTGCAAAATTCAGAATGGGTGCATGTAGAAATGGCGAGAATTGCAATTTTGCTCATGGCAATGAGGACGTGAGGCAGCCACCCCCAAATTGGCAGGAACTTATTGGCTTACGCGATGAAGAACGGCCATCTGCAAATTGGGACGATGACCAGAAAATCATACATAAGATGAAGCTTTGCAAGAAGTATTACAATGGTGAGGAATGCCCATATGGTGAAAAGTGCAATTTTCTTCATGAAGACCCCTCCAAGTTCAGGGATGATGCAGGGAGGTGCAGGGAGAGCTCAGCTATAAGCCTTGTGGCTAATGGATCTCCAAAGTCGCACTTGAATGGCCCTAATTATTCAGACAATAATAAGACTGTCAGCACCAGTTGTGATGGTTTTAGAACAAATGGGAAGGCTCCTTTCTGGAAGACTAAGTTATGTAGTAAGTGGGAGACAACAGGACAGTGCCCTTTCGGCGATAAATGCCATTTTGCCCATGGACAAGCAGAGTTACAAGTGTCTGGTGGACGCAGTGAGGCAGAAGCTATAGGAGCTGCATCAATTCCTGTGAATGATGTGTCTCCTATCAATACTGCTGCAAGTATACTTGATTCAAAGGAAGAGGAGCAGAAAAAGAAGAATTTGCTCAAGTGGAAAATAAACAAGAAGGTCAATCGAATTTATGCAGATTGGCTCGATGACCTTCCATTGCCAAGTGAACCCAATGGCGTTATCGCGTTTTAGCTTTTTCAGTTCCAATCCAAAGGATCTCAATCAGGACAGTTATGCGCAATGAAGTCAGCATCGTCACTCTTAACTCATGACAATTCTTCGGCGACCACGGGCACTTCATACCTTCCATTCTTCTTCCTTCAATACAGACCTCTATTTACTCAATGCAAGAAGATGATAAAGCTTCTTCCCTTTTCTTCATCCTCTACCATCTCTTCCATAATTCCCACTTCACTTCATACCTCTACTCTATCCAGAGCTTTCTCACCGCACAAGGCGTCCCTTACCACCATGTCCATTAACTTGCACCCTCGTGCCTACGCTGACAATACACCATTATCCAGATCCTCCAAACCTGACCTCTTTTCACCCACCGCAGCTCTTGAATCCCTGAAATTTCAACTTTCAGAGTCCCCTCAACCTTCATCCACCCCACGTTTCCAGGTCTTGCCTTTCAGAAATGGGAGACCCTTAGCCTCTTCTTCTTCGACAGCTCACTCCGGAGATTCCCAGCAGATTTGGCATCTGGGTTGGATCAATTTGGGTGATCTCAAGGTGCTCTTGGAAAGTTCTGGTGGACAATTGAACGGAGACTCGTTGGTGAAGCAAGAAGCACTTCTGTTTCGTGGAGCTGAGATCACTCATGGTTTCTTCCGATTGATCGGACTTGCAAGCGATGGGAAACTTGGCTATTGCCGGTCATCTGTTTCAAAGGTGGTCATTATGTCAATCATTGACCGAGAGAATGACTGCATCCTTTTGGGTCGAAAATCAAGTTTTGTACCAAGAATGTGGAGCTGCTTAGCAGGTTTCATAGAGCCTGGAGAAAGTTTGGAAGAGGCCGTGAGAAGAGAAACATGGGAAGAGACAGGTGTTGAAGTGGGAGAGGTTGTTTATCACAGTTCTCAGCCATGGCCTGTCGGACCAAGTAGCATGCCATGCCAGCTGATGGTTGGGTACTTTGCATATGCAAAATCCCTTGACATAAATGTGGACAAGAAAGAGTTAGAAGATGCTCAATGGTATAGTAGAGAAGATGTGAGAAAGGCATTGACAGTGGCAGAGTACAAGAAAGCTCAAAGAACTGCAGCATCGAAGGTAGAACAAATGTGCAACGGGGTGGAAAAAAGTCACACCTTAACTGCAGATTTTAACATCTCTTCTGTCCTCTACTTCTCTATTTTTGCTTGCCATCGCTTCTCGTCGTCTAGATTTGGTTCAGAACTTGCATTCACCGTCGCTGCTATCTTCTTCTTCTTCTTCACTGCCACGTCTGTTTCTGTTCACGTCTACCGTGGGAATGGAGGTGGAGGGTGGGATCAATGGAGGAGGCTGGTTACTGAGATAACATTAGGTTCGTTCATTCTATTATTTACCACACAGACCAACCCCTATGGTGGGCTGGTTACTGAGATAACACTAGGTTCGTTCATTCTACGCAATGGAACGACAGGCTGCGAGAGTTCCTCCATTGAAAAGGTATACACTTTGACTTGGCCCAATATCGCACCAACCAAGCCTGTGATCCATCACCCATCACATTCTCGAATAGATTCGCAGTTAACATTTCCAAAAATCCACCCGAACGCCCCAAACAAAGGGGAGGCCTTCCTTGTTACTTTAGACAATCGGTGTCCTCTAAAGTTGGTTGAGCTAGAGCCTAGAGCCTAG 2673 0.4598 MSFPDHHPGFMLSPLPFAADDDANGRCPQFPMNNEFFDSHSTFDQLPPFKRPRTSESNHFDPSPFPPPMNSWMLHPQNPPTNRRTSHIFYKTRLCAKFRMGACRNGENCNFAHGNEDVRQPPPNWQELIGLRDEERPSANWDDDQKIIHKMKLCKKYYNGEECPYGEKCNFLHEDPSKFRDDAGRCRESSAISLVANGSPKSHLNGPNYSDNNKTVSTSCDGFRTNGKAPFWKTKLCSKWETTGQCPFGDKCHFAHGQAELQVSGGRSEAEAIGAASIPVNDVSPINTAASILDSKEEEQKKKNLLKWKINKKVNRIYADWLDDLPLPSEPNGVIAFXLFQFQSKGSQSGQLCAMKSASSLLTHDNSSATTGTSYLPFFFLQYRPLFTQCKKMIKLLPFSSSSTISSIIPTSLHTSTLSRAFSPHKASLTTMSINLHPRAYADNTPLSRSSKPDLFSPTAALESLKFQLSESPQPSSTPRFQVLPFRNGRPLASSSSTAHSGDSQQIWHLGWINLGDLKVLLESSGGQLNGDSLVKQEALLFRGAEITHGFFRLIGLASDGKLGYCRSSVSKVVIMSIIDRENDCILLGRKSSFVPRMWSCLAGFIEPGESLEEAVRRETWEETGVEVGEVVYHSSQPWPVGPSSMPCQLMVGYFAYAKSLDINVDKKELEDAQWYSREDVRKALTVAEYKKAQRTAASKVEQMCNGVEKSHTLTADFNISSVLYFSIFACHRFSSSRFGSELAFTVAAIFFFFFTATSVSVHVYRGNGGGGWDQWRRLVTEITLGSFILLFTTQTNPYGGLVTEITLGSFILRNGTTGCESSSIEKVYTLTWPNIAPTKPVIHHPSHSRIDSQLTFPKIHPNAPNKGEAFLVTLDNRCPLKLVELEPRA 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0725 890 MobiDBLite consensus disorder prediction 468 500 - -
Lele18g0725 890 SMART c3hfinal6 231 258 IPR000571 GO:0046872
Lele18g0725 890 SMART c3hfinal6 148 175 IPR000571 GO:0046872
Lele18g0725 890 SMART c3hfinal6 89 115 IPR000571 GO:0046872
Lele18g0725 890 SUPERFAMILY CCCH zinc finger 230 262 IPR036855 GO:0046872
Lele18g0725 890 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 90 114 IPR000571 GO:0046872
Lele18g0725 890 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 232 258 IPR000571 GO:0046872
Lele18g0725 890 SUPERFAMILY CCCH zinc finger 148 175 IPR036855 GO:0046872
Lele18g0725 890 ProSiteProfiles Zinc finger C3H1-type profile. 148 176 IPR000571 GO:0046872
Lele18g0725 890 FunFam Nudix hydrolase 19, chloroplastic 569 731 - -
Lele18g0725 890 ProSiteProfiles Nudix hydrolase domain profile. 569 698 IPR000086 -
Lele18g0725 890 FunFam Zinc finger CCCH domain-containing protein 84 120 - -
Lele18g0725 890 Pfam CCCH-type zinc finger 152 173 IPR041367 -
Lele18g0725 890 MobiDBLite consensus disorder prediction 41 78 - -
Lele18g0725 890 ProSiteProfiles Zinc finger C3H1-type profile. 231 259 IPR000571 GO:0046872
Lele18g0725 890 CDD NADH_pyrophosphatase 573 684 - -
Lele18g0725 890 PANTHER NUDIX HYDROLASE, NUDC SUBFAMILY 569 721 - -
Lele18g0725 890 ProSiteProfiles Zinc finger C3H1-type profile. 89 116 IPR000571 GO:0046872
Lele18g0725 890 SUPERFAMILY Nudix 572 692 IPR015797 -
Lele18g0725 890 SUPERFAMILY CCCH zinc finger 86 120 IPR036855 GO:0046872
Lele18g0725 890 Gene3D - 225 263 - -
Lele18g0725 890 Gene3D - 82 120 - -
Lele18g0725 890 Gene3D - 146 177 - -
Lele18g0725 890 FunFam Zinc finger CCCH domain-containing protein 39 145 177 - -
Lele18g0725 890 Pfam NUDIX domain 573 688 IPR000086 -
Lele18g0725 890 PRINTS NUDIX hydrolase family signature 599 613 IPR020476 -
Lele18g0725 890 PRINTS NUDIX hydrolase family signature 613 628 IPR020476 -
Lele18g0725 890 ProSitePatterns Nudix box signature. 604 625 IPR020084 GO:0016787
Lele18g0725 890 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 570 706 - -
Lele18g0725 890 FunFam Zinc finger CCCH domain-containing protein 226 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0725 Lele-ChrLele18 4423367 4431793 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0725 231 262 C3H Transcription Factor Family AT1G68200 59.375 1.62e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele18g0725 NUDIX 1.2e-16 CL0261