Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0706 ATGGATAAGAAAAAGGTGGCGGTTCCGCTTGTTTGCCACGGCCATTCCCGGCCTGTAGTGGATCTTTTTTACAGTCCTGTTACTCCCGATGGATTCTTTCTCATCAGTGCAAGCAAGGATTCTAGTCCTATGCTTAGAAATGGAGAGACTGGAGATTGGATTGGAACATTTGAAGGGCACAAAGGTGCAGTATGGAGTTGCTGCTTGGATACAAATGCTTTACGGGCAGCAACTGCCTCTGCTGATTTCTCATCGAAAGTTTGGGATGCATTAACGGGAGATGAATTACACTCATTTGAACATAAGCACATTGTTCGCGCATGTGCTTTTTCTGAGCAGGATACACACCTTTTACTCACTGGGGGATTAGAAAACATTCTCCGAATCTATGACTTGAATCGTCCTGATGCACCACCCAGAGAAGTTGAGAAGTCTCCTGGTTCAATCAGAACAGTTACGTGGCTTCATAGTGACCAGACAATATTAAGTTCTTGTACTGATATGGGAGGTGTCAGAAGTGGTCAAATAGTGCAGACACTTGAGACCAAGTCATCTGTGACCAGTACTGAAGTGAGCCGGGATGGTCGTTACATTATAACTGCAGATGGTTCTACAGTTAAATTTTGGGATGCAAATCACTATGAGTTAGTGAAGAGTTATGATATGCCTTGCACCGTTGAATCAGCTTCATTGGAACCTAAGTGTGGGAATAAATTTGTTGCTGGAGGTGAAGATATGTGGGTTCGTGTTTTTGATTTCCATACTGGCCATGGTATTGCGTGCAACAAGGGTCACCATGGTCCTGTGCACTGTGTACGTTTCTCCCCTGGTGGAGAATCATATGCCTCTGGGTCTGAGGACGGAACCATAAGAATATGGCAAACTGGCCCTTTGAGCTGTGACGAGTCGGAGTCTATATCTGCAAATGGATCACTTGCAAAGGTGAAGGTTAATGCGGACGAGGTTTCACGCAAGATTGAGGTTTTGCACGTTGCAGATGAGGGGAAATCCAAAACAAAGGAATTGGCGAGTGAGGAATAA 1041 0.4486 MDKKKVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAATASADFSSKVWDALTGDELHSFEHKHIVRACAFSEQDTHLLLTGGLENILRIYDLNRPDAPPREVEKSPGSIRTVTWLHSDQTILSSCTDMGGVRSGQIVQTLETKSSVTSTEVSRDGRYIITADGSTVKFWDANHYELVKSYDMPCTVESASLEPKCGNKFVAGGEDMWVRVFDFHTGHGIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPLSCDESESISANGSLAKVKVNADEVSRKIEVLHVADEGKSKTKELASEE 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0706 346 SMART WD40_4 50 89 IPR001680 GO:0005515
Lele18g0706 346 SMART WD40_4 255 294 IPR001680 GO:0005515
Lele18g0706 346 SMART WD40_4 173 210 IPR001680 GO:0005515
Lele18g0706 346 SMART WD40_4 92 131 IPR001680 GO:0005515
Lele18g0706 346 SMART WD40_4 213 252 IPR001680 GO:0005515
Lele18g0706 346 SMART WD40_4 5 47 IPR001680 GO:0005515
Lele18g0706 346 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 294 IPR001680 GO:0005515
Lele18g0706 346 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 7 337 - -
Lele18g0706 346 FunFam Serine-threonine kinase receptor-associated protein 8 318 - -
Lele18g0706 346 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 262 294 - -
Lele18g0706 346 Pfam WD domain, G-beta repeat 54 89 IPR001680 GO:0005515
Lele18g0706 346 Pfam WD domain, G-beta repeat 263 293 IPR001680 GO:0005515
Lele18g0706 346 Pfam WD domain, G-beta repeat 174 210 IPR001680 GO:0005515
Lele18g0706 346 Gene3D - 9 316 IPR015943 GO:0005515
Lele18g0706 346 ProSiteProfiles Trp-Asp (WD) repeats profile. 57 98 IPR001680 GO:0005515
Lele18g0706 346 SUPERFAMILY WD40 repeat-like 4 300 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0706 Lele-ChrLele18 4307643 4310320 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0706 9 292 Eukaryotic Initiation Factors Gene Family AT2G46290 27.077 2.55e-33 124