Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0700 ATGACGATTGACGACGAGAGTTCCATATACGTTGGAGGTCTTCCCTATGATGCCACCGAAGATACCATTCGTACCGTCTTTGATCTGTATGGCGCCATTCTTGACGTCAAGATTATTAATGATGTCCGGACTAGGGGCAAGTGCTATTGTTTTGTAACTTTCACAAATCCTCGATCAGCAATTGATGCAATCAATGACATGAATGGAAGGACCATTGATGGGCGCGTGGTTAAAGTAAATGGGGTGAGGACTCGAGGTGGAAGATCAAATTTTGGTAGGGAACTTATTCAGCATGATCATGATACTAATAGGAATGGAGATTGGGATTGTAGTAGAGATCGAGACCGAGATTATAATCATGACAAGGACAGGCACAGGAATCAAAATAGTGATTGGTCTCGAGAGCGTGATAGATCTCGAGAGCATGATAGATCTGGAGACTTTGAGCATGAAGGGGATAGAAGATATGAGCACGCACATTATCATGATCTAGAAAGAGAACCTTTCCATGTTAAAGATCGAAGTCAAGAGAGTGATGAACAAGAACACAGCAAAGCACTTGGTCAAGCTACGCAAAGAGACTATAACCTAGATTATGATACAGACAAGAAGATGGACAGGACTTATGATCCTGACAGAAGTTTTGATGGGGATAGAAATGAACACTCAAGGAGAAACAATGGATTTACAAAACAACCTAACATGGATTTTTCATTAGACTCAAATGGTTACCACAATGACGAGATTGCAGATCAATTAGATAGGTCAACTCAAAGGCTTGGTCAACTGAAAAGTGAGGTCTCTCAGTTGGAAGAGAAGTTACAAGAGAAACGACATCTTGTTATGGATTTACAAAAGCAATCTAGGAAACTGGAGGATGCATTAATTAATGCAAAGAAACGTTCTTCATATCGTCAGATGCAGTTGACCAAGCTCCACAAATGTTTTCTGCAAGTGAAAGATTACACAGAGCGACTAAAAACCTGTGAAAAAGAACTTCAGACTATGGTTGATACGGCAATGTTAGAGAGTGATGGTGATGGCGAAGCTGTTGGCTTAAAGGATTTACAAATGATAAGTGGATATGTATGA 1092 0.4029 MTIDDESSIYVGGLPYDATEDTIRTVFDLYGAILDVKIINDVRTRGKCYCFVTFTNPRSAIDAINDMNGRTIDGRVVKVNGVRTRGGRSNFGRELIQHDHDTNRNGDWDCSRDRDRDYNHDKDRHRNQNSDWSRERDRSREHDRSGDFEHEGDRRYEHAHYHDLEREPFHVKDRSQESDEQEHSKALGQATQRDYNLDYDTDKKMDRTYDPDRSFDGDRNEHSRRNNGFTKQPNMDFSLDSNGYHNDEIADQLDRSTQRLGQLKSEVSQLEEKLQEKRHLVMDLQKQSRKLEDALINAKKRSSYRQMQLTKLHKCFLQVKDYTERLKTCEKELQTMVDTAMLESDGDGEAVGLKDLQMISGYV 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0700 363 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Lele18g0700 363 MobiDBLite consensus disorder prediction 87 243 - -
Lele18g0700 363 MobiDBLite consensus disorder prediction 92 187 - -
Lele18g0700 363 Coils Coil 246 301 - -
Lele18g0700 363 SUPERFAMILY RNA-binding domain, RBD 4 108 IPR035979 GO:0003676
Lele18g0700 363 MobiDBLite consensus disorder prediction 227 241 - -
Lele18g0700 363 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 2 99 - -
Lele18g0700 363 SMART rrm1_1 8 80 IPR000504 GO:0003723
Lele18g0700 363 Gene3D - 2 96 IPR012677 -
Lele18g0700 363 CDD RRM_SF 9 80 - -
Lele18g0700 363 Coils Coil 319 339 - -
Lele18g0700 363 PANTHER GEO13361P1-RELATED 6 201 - -
Lele18g0700 363 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Lele18g0700 363 MobiDBLite consensus disorder prediction 196 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0700 Lele-ChrLele18 4264040 4267350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0700 7 73 Eukaryotic Initiation Factors Gene Family AT2G23350 32.836 5.00e-07 49.7