Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0699 ATGGCTTCTTCGTCTGAACTAAGCCTGGATTGCAAACCCCACAGCTATTCTTTGCTTCTGAAATCATTTGGAGATCAAGCAGATCATACCTACAAGCTTGAGGAGTTCCTTTCTCGCCTCGAGGAAGAACGTTTCAAGATCGATGCCTTCAAGCGCGAGCTTCCTCTCTGCATGCAGCTTCTTACCAACGCTATGGAGGCCTCAAGGCAGCAACTTCAGGCCTACAGAGCAAATCAAGGCACGACGACGAGGCCAGTGCTGGAAGAATTCATACCCATCAAGCAATCAACCCCTGAGAGCTCTGAGAAGGCATCCAACGTATCAGACAAGGCAAATTGGATGACATCTGCTCAATTATGGAGCCAAGCAAATGAAGGAACCAAGCCCCAGTCCACAATCACGTCCCCAAAAGAAGCTGATCTTGGTTTCAGTGTGAGCCGTAAGCTTGCTCTTGACAACAAACAGAGAAATGGAGGAGCCTTCCTACCATTCTCAAAAGAACGAAACTCATCATCATGCCAAAGTGGATCCACCGCATTACGGGTCATCCCAGAGTTGGCCCTCGCATCTTCTGAGAAAGAGACGGAGGATAATAAGAAATGCACAGAACCAGAAAATGCAGTGTCATGTCCCAAGAGGGAAAATTCTGGTAAAGCCCCCGGAGGCAACGGTACTGGGGTAGTAGTCACTGAGCAAGGAAAAGGAGCCCCGGATTCATCTGATCCACAAACAACAACAACCACCACCAACACAACTAGCCAAACTCATAGGAAGGCAAGAAGATGCTGGTCACCGGACCTGCACCGCCGATTTGTAAATGCTCTTCAGATGCTAGGTGGATCTCAAGTGGCTACACCAAAGCAGATAAGGGAGCTGATGAAGGTTGACGGTTTGACCAATGATGAAGTGAAAAGCCATCTCCAGAAATATAGGCTTCATACACGACGTCCCAGTCCAAGCCCACAAGCAGCCGGGTCACCCGCACCTCAGCTCGTTGTCCTAGGAGGAATCTGGGTCCCACCGGAGTACGCTGCCGCCGCTGCTCACACTGGCGCACCTGCTATCTATAGCCCACACCCTACCTCCCACGCGGCGCCGCCTCCCCACTACTGTACCGCAACGCCAGTGCACCAAGAATTCTACGCTGCCACCGCGGCTCCACAGCCAGCTCCGCCGCACTACCAAACGCTGCTCCATCACCATCTGCAGATGTACAAAACGAACTCGCACCAGGGCTCGCCGGAATCCGAGATGCGAGGAGGGGGAGAGAGGTCGGAGAGTATAGAGGACGGGAAGTCGGAGAGCAGCAGCTGGAAGGGAGAGAGCGGGGAGAACGAAGGGAAGAGGAAAGGACTGGCGGCACTGAGAGAAGAAGGAGAAGAGAGTAGTCGGAGCGAGACGACCCTGAAATTCTAG 1416 0.5268 MASSSELSLDCKPHSYSLLLKSFGDQADHTYKLEEFLSRLEEERFKIDAFKRELPLCMQLLTNAMEASRQQLQAYRANQGTTTRPVLEEFIPIKQSTPESSEKASNVSDKANWMTSAQLWSQANEGTKPQSTITSPKEADLGFSVSRKLALDNKQRNGGAFLPFSKERNSSSCQSGSTALRVIPELALASSEKETEDNKKCTEPENAVSCPKRENSGKAPGGNGTGVVVTEQGKGAPDSSDPQTTTTTTNTTSQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQAAGSPAPQLVVLGGIWVPPEYAAAAAHTGAPAIYSPHPTSHAAPPPHYCTATPVHQEFYAATAAPQPAPPHYQTLLHHHLQMYKTNSHQGSPESEMRGGGERSESIEDGKSESSSWKGESGENEGKRKGLAALREEGEESSRSETTLKF 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0699 471 MobiDBLite consensus disorder prediction 407 471 - -
Lele18g0699 471 Coils Coil 58 78 - -
Lele18g0699 471 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 20 439 IPR044787 GO:0003700|GO:0006355
Lele18g0699 471 MobiDBLite consensus disorder prediction 190 207 - -
Lele18g0699 471 SUPERFAMILY Homeodomain-like 255 316 IPR009057 -
Lele18g0699 471 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 258 313 IPR006447 GO:0003677
Lele18g0699 471 Gene3D - 257 315 - -
Lele18g0699 471 MobiDBLite consensus disorder prediction 236 258 - -
Lele18g0699 471 MobiDBLite consensus disorder prediction 417 471 - -
Lele18g0699 471 MobiDBLite consensus disorder prediction 189 261 - -
Lele18g0699 471 Pfam Myb-like DNA-binding domain 260 311 IPR001005 -
Lele18g0699 471 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 255 315 IPR017930 -
Lele18g0699 471 FunFam Myb family transcription factor 257 315 - -
Lele18g0699 471 Coils Coil 33 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0699 Lele-ChrLele18 4260078 4262287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0699 1 471 G2-like Transcription Factor Family AT2G03500 50.913 3.27e-135 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele18g0699 Myb_DNA-binding 1e-05 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1224 21 15264762 15285512 Lele18g0699 18 4260078 4262287 CCT
Lele18g0699 18 4260078 4262287 Lele19g0740 19 4348502 4350720 hybridization
Lele18g0699 18 4260078 4262287 Lele20g0720 20 14234351 14236564 hybridization