Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0684 ATGTTTCCTTCGAACACTTTTCCCTTTGACAGCAACCTAAACTCCACGCAACAAAGCCTTCCTCCTCCTCGTCCTCCTCCTTTCTCCTTCCTTCACTTCCCTCAGCCTTCCTTTGAAGACCACGAAATCTTCCTCCCACAACAACCAAACCACCATCATGACCACCTCTTACTTCATCATCAGTCACAACCTCTAGCTGAAGTAGTAAGTGCCAGCATGGATGTTTTGAACAAGAATGAGCAGATCCCGGTAAGGAATAAGAGGATTTGCAAGAGAGATAGGCACAGCAAGATAAAGACCGCTAAAGGGCTAAGAGATCGGAGAATGAGACTATCTCTGGAAGTAGCCAAGAGATTCTTTGGTCTTCAAGACATTCTAGGCTTTGACAAGGCCAGCAAAACCGTTGAGTGGCTGCTGAATCAGTCAAAGGACGAGATCAAACAGCTAGCAATAGACAAGAATTACAATAATTGCAGTGGGAATGGTGGGGTTAAGAGTGCATCTTCAACTTCAGAGTGTGAAGGGGTGTCAGGTTTGGACGAGGTGGCATTAAGTGGAATGAATCAAGAGCAAGAGGGAGATCAACGTTCCTTACTGGTGAAGAGAAGGACAAAAAATACAAGAAAGAGTGCACTATTGGATCCTCTTATTGCAAGGGAGTCAAGGGAAAAGGCTAGAGAGAGGGCAAGAGAGAGGACCAAGCAGAAGCAGAAGATGAACATGAAAAGTCGCCAATCATTGCCAGCAGCTGACGACACAACCAACCATAATTGTAACCTCACCCAATTTGGTTCATGGAATCCGTTTGAAACAGGAGAAAAGGTGAATAATCCCTCCTTGGAGGTGATGGCCGAGGCTGCTGAAGATGAACGAAGCTCTCAGGCTAAGGATGATGATTCCTTGGCGGTTAATATGGGCAAATGGAGCCCATCCATGATATTCAACTCATTGAGTACTTCATCTACACTCGTACAAGATCATCATCAATTTGCGGAATTTCAGCCATTGGCAAAACTTTGGGAGGCCTACTACAATCACATGATGATCTAA 1050 0.4505 MFPSNTFPFDSNLNSTQQSLPPPRPPPFSFLHFPQPSFEDHEIFLPQQPNHHHDHLLLHHQSQPLAEVVSASMDVLNKNEQIPVRNKRICKRDRHSKIKTAKGLRDRRMRLSLEVAKRFFGLQDILGFDKASKTVEWLLNQSKDEIKQLAIDKNYNNCSGNGGVKSASSTSECEGVSGLDEVALSGMNQEQEGDQRSLLVKRRTKNTRKSALLDPLIARESREKARERARERTKQKQKMNMKSRQSLPAADDTTNHNCNLTQFGSWNPFETGEKVNNPSLEVMAEAAEDERSSQAKDDDSLAVNMGKWSPSMIFNSLSTSSTLVQDHHQFAEFQPLAKLWEAYYNHMMI 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0684 349 MobiDBLite consensus disorder prediction 240 274 - -
Lele18g0684 349 Pfam TCP family transcription factor 91 239 IPR017887 -
Lele18g0684 349 ProSiteProfiles R domain profile. 219 236 IPR017888 -
Lele18g0684 349 MobiDBLite consensus disorder prediction 210 274 - -
Lele18g0684 349 MobiDBLite consensus disorder prediction 1 28 - -
Lele18g0684 349 MobiDBLite consensus disorder prediction 1 18 - -
Lele18g0684 349 ProSiteProfiles TCP domain profile. 91 149 IPR017887 -
Lele18g0684 349 MobiDBLite consensus disorder prediction 215 238 - -
Lele18g0684 349 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 65 341 IPR005333 GO:0003700
Lele18g0684 349 Coils Coil 222 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0684 Lele-ChrLele18 4146641 4147937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0684 87 247 TCP Transcription Factor Family AT3G18550 45.977 3.73e-32 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lele18g0684 TCP 8e-46 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele18g0684 18 4146641 4147937 Lele19g0727 19 4229314 4230597 hybridization
Lele18g0684 18 4146641 4147937 Lele20g0733 20 14348451 14349734 hybridization