Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0676 ATGGATTCGATGGACATTGTTGGGAAATCGAAGGAAGACGCTTCCCTTCCTAAAGAGTTTATAAACCTTCTTTCATCAGAGTTCAATGAAGTCTGTAATAGAGAGGATAAGCGGACAATTGCACCAGAGCATGTATTGAAGGCTTTACAGGTTCTTGGATTTAGTGAGTACATTGAGGAAGTTTATGCAGCATACGAGCAGCATAGGATTGAGACCATGGACTCTTTAAGAGCTGGCAAGTGGAGCAATGGAGCTGAGATGACTGAGGAGGAAGCGTTACTGGAGCAGCAGAGGATGTTTGCAGAGGCGCGTGCTAGAATGAACGGTGGGGCCATTGCTCCCAAGCAGCCAGATGCTGAACAAACTTTAGATAGCTAA 378 0.455 MDSMDIVGKSKEDASLPKEFINLLSSEFNEVCNREDKRTIAPEHVLKALQVLGFSEYIEEVYAAYEQHRIETMDSLRAGKWSNGAEMTEEEALLEQQRMFAEARARMNGGAIAPKQPDAEQTLDS 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0676 125 SUPERFAMILY Histone-fold 18 111 IPR009072 GO:0046982
Lele18g0676 125 PANTHER PROTEIN DR1 HOMOLOG 19 124 IPR044255 -
Lele18g0676 125 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 18 49 IPR003958 -
Lele18g0676 125 Gene3D Histone, subunit A 9 111 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0676 Lele-ChrLele18 4078530 4081921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0676 1 122 CCAAT-DR1 Transcription Factor Family AT5G23090 63.399 4.49e-60 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lele18g0676 CBFD_NFYB_HMF 4.5e-06 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele18g0676 18 4078530 4081921 Lele19g0717 19 4159743 4164796 hybridization
Lele18g0676 18 4078530 4081921 Lele20g0741 20 14417055 14420334 hybridization