Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0672 ATGTCATCGGCGCCGTCGACGATTCTACAGCCGGAGCAGCAGCAACAAGCAGGTCCCGGAGAAGCGCAGATGCCGGAGATGACTACTCCGGAGACTGTACCGACCCCTAGTGCTTGGGAATCTTCTGGTTCTGTTGGTCCTTTCTTTGCTGTCATTTCTGTGCTGACTGTTCTCGCTGTTCTTTCCTGCTATTTGGGACGAAAATGGAACCCTAGGCCTATGACCCCTTTGGAGAGCATCGAGAATGACAACAGAAGCTGTTTTGGCTGGCTCAAGTTCTTGTGTCGCCCATGGATACCAACGCTGGTTCAAGTTAAGAACGTTAATAAGTCGCCGGAGATCATGGCGGCTTCTGCTAATAAACACAGTGATGATGATTGTAAAGTTGAAGAAGGTGCACAAAACCTGCACCTTCAGGAACTGAGGAGCTTATCATCGGGGCTAGCTGGTGATTTTGCAGAATCGATCACATTGAGATATATTGAGATGTCGTCAAAGCTTCTCCAAGTCGATCAGCTTAAGCAACTGAGGGAAGTTTTTGTCCGATTTGACATGGACTCCGACGGCAGCCTGACAGTCCTAGAGCTAGCGGCGCTTCTCCGATCGCTTGGCCTGAAGCCCACCGGAGATCAAATCCACGCGCTGTTAGCCACCATGGACTCCAACGGCAATGGATCGGTGGAGTTCGATGAATTGGCGAAAGCGATACTGCCAGACTTGAGGAAAGAAGAGGTAATGGTGAATCAAGAGAAGCTTCTAGAGGTTTTCAAGTGCTTCGATCGCGACGGAAATGGGTACATATCGGCGGCGGAGTTAGCCAGAGCAATGGCCAAAATGGGCCAGCCTCTCACGTACAGAGAACTCACGCAAATGATCAAAGATGCCGATGAAGATGGCGACGGTGTGATTAGCTTCAGTGAGTTTGCCAATGTAATGGCCAAGTCCGCCTCTGATTTCTTTGGCCTTTCATCGCCATAA 978 0.501 MSSAPSTILQPEQQQQAGPGEAQMPEMTTPETVPTPSAWESSGSVGPFFAVISVLTVLAVLSCYLGRKWNPRPMTPLESIENDNRSCFGWLKFLCRPWIPTLVQVKNVNKSPEIMAASANKHSDDDCKVEEGAQNLHLQELRSLSSGLAGDFAESITLRYIEMSSKLLQVDQLKQLREVFVRFDMDSDGSLTVLELAALLRSLGLKPTGDQIHALLATMDSNGNGSVEFDELAKAILPDLRKEEVMVNQEKLLEVFKCFDRDGNGYISAAELARAMAKMGQPLTYRELTQMIKDADEDGDGVISFSEFANVMAKSASDFFGLSSP 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0672 325 Gene3D - 243 320 - -
Lele18g0672 325 ProSitePatterns EF-hand calcium-binding domain. 260 272 IPR018247 -
Lele18g0672 325 Gene3D - 110 242 - -
Lele18g0672 325 ProSitePatterns EF-hand calcium-binding domain. 296 308 IPR018247 -
Lele18g0672 325 ProSitePatterns EF-hand calcium-binding domain. 184 196 IPR018247 -
Lele18g0672 325 ProSiteProfiles EF-hand calcium-binding domain profile. 207 242 IPR002048 GO:0005509
Lele18g0672 325 PANTHER CALCIUM BINDING PROTEIN 248 312 - -
Lele18g0672 325 Pfam EF-hand domain pair 174 236 IPR002048 GO:0005509
Lele18g0672 325 Pfam EF-hand domain pair 250 312 IPR002048 GO:0005509
Lele18g0672 325 FunFam probable calcium-binding protein CML18 243 319 - -
Lele18g0672 325 MobiDBLite consensus disorder prediction 1 39 - -
Lele18g0672 325 ProSiteProfiles EF-hand calcium-binding domain profile. 283 318 IPR002048 GO:0005509
Lele18g0672 325 ProSitePatterns EF-hand calcium-binding domain. 220 232 IPR018247 -
Lele18g0672 325 CDD EFh 251 313 IPR002048 GO:0005509
Lele18g0672 325 CDD EFh 175 236 IPR002048 GO:0005509
Lele18g0672 325 SMART efh_1 211 239 IPR002048 GO:0005509
Lele18g0672 325 SMART efh_1 287 315 IPR002048 GO:0005509
Lele18g0672 325 SMART efh_1 175 203 IPR002048 GO:0005509
Lele18g0672 325 SMART efh_1 251 279 IPR002048 GO:0005509
Lele18g0672 325 SUPERFAMILY EF-hand 168 313 IPR011992 -
Lele18g0672 325 FunFam Probable calcium-binding protein CML15 161 241 - -
Lele18g0672 325 ProSiteProfiles EF-hand calcium-binding domain profile. 247 282 IPR002048 GO:0005509
Lele18g0672 325 ProSiteProfiles EF-hand calcium-binding domain profile. 171 206 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0672 Lele-ChrLele18 4046754 4049456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0672 171 322 EF-hand Containing Proteins AT1G18530 76.974 1.46e-83 248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele18g0672 18 4046754 4049456 Lele19g0713 19 4137402 4139414 hybridization
Lele18g0672 18 4046754 4049456 Lele20g0744 20 14442768 14446879 hybridization