Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0658 ATGGATGATAAAGAAAATCGTTGTTCAAGTGTTAACGGGAATTACTGGTTCTTCCGAAGACGAACGCCTCGGAGCTCAGCTCACACAAAGATGTCGTTTGTTCCGAGTTCCCCAAATAAACGACTCAAGGCCCAAGACCAGGAGGACTCCGATCATAACCTCTACCTGCCACCTTCGTTCGACGATGACCAGCCTGATTCTTGTGGAATTTGCTACGCCGACCATGGCACTTCAATCAGAGGTGAAATTGATTGTTGCAGTCACTTTTTTTGCTTCGTCTGCATCATGGAATGGTCCAAGCATGAGTCTCGATGCCCCCTCTGTCGACAAAGATTCTCGACCGTTCGCCGCCCCACTAAGCCCGACGTCTTCCCTTCCTCGCGTCTCGTTAAAGTCCCTATTCGTGACCAGGTTTACCATGTCCATGGAAATATCACGACAGGTCCTGTGGATCCTTATTCTGAAACTCGGTGTAGTGTCTGTAAGGGTGAGGAAGATGAAAGTTTTCTTCTACTATGTGATCTTTGTGATACTGCTTCTCATACATATTGTGTTGGCCTTGGCTATGTTGTGCCTGAAGGTGATTGGTTTTGTCAAGATTGTTCTTTTTCCAAGGAAATTAGTGACAATAACAATGTAGACCATCAATGCGACATACCAACAGCTGAGCCAAGTGTAACAATCCTTGATATTGTGAGAGAATCAAGACCGTCTCCTCTTGTTACCCCTTTACCTGATAGGATGAATAGAAACAAAGATAGAAATCGTGACATGAGAGTTATTACCCCTTTACCAGATAGGGTGAATAGAAACAAAGATAGAAATCATGACATAAGTGCTCGGACATTGCGCCGATGTCGCAATGTGCAACGTAATATACAAGCTTTGCGTGAAAATTGGAATGCTTTGAGAAATGGTTCATTAAGGTTCTCTTCCACTTCGTCTGAATCTGGTGTCAGACGTGTTAAACAACAGAATAGTGATTCCTTACATCGTGGAAAGTCAGATCAACTGCATTCTTCGGCGGCTTCCACAAGCCTTCAGCAATCTATAATTCAAAGTAGTAGACCTTCTAACAACATATCGAATGAGAGAGACTCAGAAGATGTCAACAAGGCTTGGAAAATGCTGGAGAGAGCAAAGATGATGGAAAAGACTAATCATAAAGGCAGCATCCTTCCACAAGGATTGGATCACTCCTCAAGAGGTGTAGGACCTAGAAAAGCACCAAGAATTCATTGTAATGATCAAGAATCGAAGATTCATCAATCTAGAAGACCCACAGGAAATGAGAAGCGATATGGCTTTTCTAGTTTTAATAAGGATATGGACAATCGCAGGCCTCTAGATTTGGGAGGAAAAAGGCATAGTGGGGTCACACATAAGGAGACAACACCAAATATTAGGTACCAAGCTTCTCGTTTAGAAGAATGCTGTGAACCTTCATTGCCTAGAAAAAGGCCGAGTAGCATTCTATGTGCTCCCCGTCATGAAAATAGGGAGAGAAATTTTGCTAAGGAACAAAGCAAGTCTTCTTGTTTAGTAACTTCAGTGGGTTCTGTTCCTTCTGATGGCAAGATTAGAAGTGTGTCCTCCTCAAGCAGGGACGCAGGTGAAAAAAAGCCGTTGTCTAAAAATTTTGGGGATGCAAACACACAAGAAAGTGAAGATGCTAAAAACGAGATCAAGTCTCTTGTCAAGCTCAATCTGAAAGTCCTAAATAAAGATAAGCAATTAGGTGTTGATGCATTCAAGGAAATTGCTAGGCACTCGACCCACGCTATCTTGGCCGCATGTCGATCAGAGCACGAAGAGCTGGGCGCAAGCTCCTCGAGCTCTTTATGCAGTCACAGGGGCGATGATGAGCATTTTCACAAGTCCACCTTAATGCCTAATTGTTGCCGACAATGTTTTTACATGTTTGTCGAGAATTTGGTCAACTCCACTATGATGGAGAAGTTGGGTGGGGGCATATCTTCCTGA 1983 0.4342 MDDKENRCSSVNGNYWFFRRRTPRSSAHTKMSFVPSSPNKRLKAQDQEDSDHNLYLPPSFDDDQPDSCGICYADHGTSIRGEIDCCSHFFCFVCIMEWSKHESRCPLCRQRFSTVRRPTKPDVFPSSRLVKVPIRDQVYHVHGNITTGPVDPYSETRCSVCKGEEDESFLLLCDLCDTASHTYCVGLGYVVPEGDWFCQDCSFSKEISDNNNVDHQCDIPTAEPSVTILDIVRESRPSPLVTPLPDRMNRNKDRNRDMRVITPLPDRVNRNKDRNHDISARTLRRCRNVQRNIQALRENWNALRNGSLRFSSTSSESGVRRVKQQNSDSLHRGKSDQLHSSAASTSLQQSIIQSSRPSNNISNERDSEDVNKAWKMLERAKMMEKTNHKGSILPQGLDHSSRGVGPRKAPRIHCNDQESKIHQSRRPTGNEKRYGFSSFNKDMDNRRPLDLGGKRHSGVTHKETTPNIRYQASRLEECCEPSLPRKRPSSILCAPRHENRERNFAKEQSKSSCLVTSVGSVPSDGKIRSVSSSSRDAGEKKPLSKNFGDANTQESEDAKNEIKSLVKLNLKVLNKDKQLGVDAFKEIARHSTHAILAACRSEHEELGASSSSSLCSHRGDDEHFHKSTLMPNCCRQCFYMFVENLVNSTMMEKLGGGISS 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0658 660 MobiDBLite consensus disorder prediction 336 361 - -
Lele18g0658 660 ProSiteProfiles Zinc finger RING-type profile. 68 109 IPR001841 -
Lele18g0658 660 SMART PHD_3 157 202 IPR001965 -
Lele18g0658 660 Coils Coil 279 299 - -
Lele18g0658 660 SUPERFAMILY RING/U-box 67 119 - -
Lele18g0658 660 MobiDBLite consensus disorder prediction 515 532 - -
Lele18g0658 660 MobiDBLite consensus disorder prediction 409 429 - -
Lele18g0658 660 Pfam Ring finger domain 66 109 IPR001841 -
Lele18g0658 660 MobiDBLite consensus disorder prediction 309 324 - -
Lele18g0658 660 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 216 IPR013083 -
Lele18g0658 660 MobiDBLite consensus disorder prediction 515 559 - -
Lele18g0658 660 MobiDBLite consensus disorder prediction 28 48 - -
Lele18g0658 660 ProSitePatterns Zinc finger RING-type signature. 86 95 IPR017907 -
Lele18g0658 660 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 125 IPR013083 -
Lele18g0658 660 MobiDBLite consensus disorder prediction 309 370 - -
Lele18g0658 660 ProSiteProfiles Zinc finger PHD-type profile. 155 204 IPR019787 -
Lele18g0658 660 MobiDBLite consensus disorder prediction 239 258 - -
Lele18g0658 660 PANTHER F18C1.6 PROTEIN 46 653 - -
Lele18g0658 660 SUPERFAMILY FYVE/PHD zinc finger 149 206 IPR011011 -
Lele18g0658 660 MobiDBLite consensus disorder prediction 390 461 - -
Lele18g0658 660 Pfam PHD-finger 157 203 IPR019787 -
Lele18g0658 660 MobiDBLite consensus disorder prediction 437 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0658 Lele-ChrLele18 3968513 3971025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0658 134 208 C2H2 Transcription Factor Family AT3G01460 30.263 1.24e-09 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele18g0658 PHD 3.3e-10 CL0390