LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele18g0657	ATGGAGCTCCCTCAAGCGCGTCCCCTTGGAACCGAAGCAAGAAAACCGACGCATGACTTTCTGTCACTATACAGTCATTCAACTGCCCAACAAGATCCGAGGCCACCACCATCTCAAGGAAGTTACCTGAAAACGCATGATTTCTTGCAGCCACTACTACAACCTGTTGAGAAGAAAGCAAACGCGAAGGAAGAAGCATCGGATGAGATATCATCAGTGGTTCAAAAGCCACCACCTCCTGCTCCACCGCCGCCGCCGATACCATGTGTTGAGCACATTCTACCTGGAGGCATTGGGACTTACAGTATCAGCCACATTTCGTATTTTAGTAATCCCAGGGTTCCAAAGCCGGAGGCTTCTTCCCTTTTCACTGTGTCTCCTTGTGAAGCAAGTACAGATAGAAATGAGGAGCACTCCAACTGCAGTTCATATACTGGAAGTGGTTTCACTTTGTGGGAAGAATCTGCCGTTAACAAGGGAAAGACAGGGAAGGAGAATGACGTGGGAGAGAAACCCGTTATAGCAGAGTGTGCAGGCAAGCCAGGGCAGTGGTCGTTGACTGAGAGAGCATCTCAGTCACTGGTTAGGAATAATCAGAATAGCTTCAGTTCCATCACTTCCACTCAGAAAAGTGGGCAGAAGAACCAGAGTTTTATTGATATGATAAAATCCGCCAAAGATTGCTCTCAGGATGACGAGCTAGACAATGAAGAAGCATTCATTTTTAAGAAGGAATCCTCAACTTCTACCCAAAGAGGCGAATTGAGCGTGAAAGTGGATGGGAAGAGTTCTGACCAAAGGCCCAACACACCGCGATCAAAACATTCTGCAACAGAACAGCGTAGAAGGAGCAAAATTAATGACAGATTCCAGATGTTGAGAGAGCTTATTCCACATAGTGACCAGAAAAGAGACAAGGCATCTTTTCTGTTGGAGGTCATTGAGTACATTCAATTTTTACAAGAAAAGGTTCATAAACACGAAGGTTCATACCAAGTTTGGAATCAAGAGAAAGAAAAATCGACTCCATGGAGGAATAATCACAGGCCTTCAGAAAGCTATGATGATCAATCTCGTGTAATAAATAGTGGATTAGGTCCTTCTTCAATATTACTGTTTCCTTCAAAGATGGAGGAGGAAAATTTTAGCATCTCCCCAACAATTACTGGGGGCACAAAGAACGTAGATGCTGGCACTAGTTCTGCAACTACATTGAAGGCAATGAATCAGCATCCTGGAATAACCAATAAAGTCATGCCAATTCCTAACTCTTCACAGCCAAAGTTCCTCAATCCTGGCCAAAGTGGCGGTCCAGGTAGATTGGCGTCTCAGCTCACTCACAGGCTAGCCTCAGATGCTGAAAATACCATATATAATCCCTTAGGATCATCTCAGACCCACTCTTCTGCTACAGGGGTGAATGCTGCTAGTGATAAGCTTAAAGAGAAAGAGCTCACTGTTGAAAGCGGTGCCATTAGCATATCAAGTGTGTACTCAAAAGGGTTGTTGGATTCACTAACACATGCACTGAAGAATTCAGGAGTGGATTTGTCACAAGCTAGCATCTCAGTTCAAATTGAGCTTGGTAAGCAAGCAAACATCAGACCGATTGGACCAACTTCTGGGGTTAAGGATGAAGTTACTTCTAGCAATCAAGGGATGATGAAGCGCTCTAGAGTTTGTAGCGTAGAGGAGACTGACCTAGCAGTAAAGAAGCTAAAGACAAGCAGAAGTTGA	1737	0.445	MELPQARPLGTEARKPTHDFLSLYSHSTAQQDPRPPPSQGSYLKTHDFLQPLLQPVEKKANAKEEASDEISSVVQKPPPPAPPPPPIPCVEHILPGGIGTYSISHISYFSNPRVPKPEASSLFTVSPCEASTDRNEEHSNCSSYTGSGFTLWEESAVNKGKTGKENDVGEKPVIAECAGKPGQWSLTERASQSLVRNNQNSFSSITSTQKSGQKNQSFIDMIKSAKDCSQDDELDNEEAFIFKKESSTSTQRGELSVKVDGKSSDQRPNTPRSKHSATEQRRRSKINDRFQMLRELIPHSDQKRDKASFLLEVIEYIQFLQEKVHKHEGSYQVWNQEKEKSTPWRNNHRPSESYDDQSRVINSGLGPSSILLFPSKMEEENFSISPTITGGTKNVDAGTSSATTLKAMNQHPGITNKVMPIPNSSQPKFLNPGQSGGPGRLASQLTHRLASDAENTIYNPLGSSQTHSSATGVNAASDKLKEKELTVESGAISISSVYSKGLLDSLTHALKNSGVDLSQASISVQIELGKQANIRPIGPTSGVKDEVTSSNQGMMKRSRVCSVEETDLAVKKLKTSRS	578

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele18g0657	578	MobiDBLite	consensus disorder prediction	258	287	-	-
	Lele18g0657	578	MobiDBLite	consensus disorder prediction	336	361	-	-
	Lele18g0657	578	MobiDBLite	consensus disorder prediction	543	557	-	-
	Lele18g0657	578	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	268	337	IPR036638	GO:0046983
	Lele18g0657	578	MobiDBLite	consensus disorder prediction	21	38	-	-
	Lele18g0657	578	MobiDBLite	consensus disorder prediction	75	91	-	-
	Lele18g0657	578	MobiDBLite	consensus disorder prediction	1	91	-	-
	Lele18g0657	578	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	270	320	IPR011598	GO:0046983
	Lele18g0657	578	SMART	finulus	276	326	IPR011598	GO:0046983
	Lele18g0657	578	MobiDBLite	consensus disorder prediction	537	560	-	-
	Lele18g0657	578	MobiDBLite	consensus disorder prediction	245	287	-	-
	Lele18g0657	578	CDD	bHLH_AtBIM_like	269	345	-	-
	Lele18g0657	578	Pfam	Helix-loop-helix DNA-binding domain	272	321	IPR011598	GO:0046983
	Lele18g0657	578	MobiDBLite	consensus disorder prediction	341	355	-	-
	Lele18g0657	578	Gene3D	-	268	342	IPR036638	GO:0046983
	Lele18g0657	578	PANTHER	BES1-INTERACTING MYC-LIKE PROTEIN	12	576	IPR044295	GO:0003700\|GO:0006351\|GO:0046983
	Lele18g0657	578	FunFam	BHLH domain class transcription factor	268	340	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele18g0657	Lele-ChrLele18	3954198	3958646	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele18g0657	1	532	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT5G08130	48.732	9.24e-118	358

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Lele18g0657		HLH	2.7e-15	No_clan