Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0645 ATGAGCAAGATTGGCCAGCCATTGAGTGAAGCAATGGATCCAGAGAGTGATCACCACAGCAAATCCATTTTTGGGTTCATAGATATCTGCACGAGCCACGAGGAGATAAAAGGCGAAGAAGGGGAGAAAGATAGAGAGAAAGAAGTGCCCTTTCTACTCAGAAAAAGAACCAGAGAGCATGGGAATGGACTTTGGGAAAGAAGGAAGAGAGACGATGCCTCAGCTGATCAGCAGCTGACAGACCTTGAACATGGTGATGCTCTACCGGCTGCAAATGTGGGATTCTGTCGAGTGCTTTCACTTCCAAAATTTGGTGGGAAGATAATTGACATTGTTTCGGGAGATATTTCAACCCCTGAGGAGAAAGATAAAGCTCTGGATGCTGTCAAGAGCACCATACTATCTATCTTTATGATTGTTGTTGTGGGTTCAGTTTCCACAGCACTGCGAGCATGGCTTTTCTCTTCTGCCAGTGAAAGGGTTGTTGCACGGTTGAGAAAAAGATTGTTTAGTCACCTCATAAACCAGGAGATAGCCTTCTATGATGTTACTCGAACTGGAGAACTTCTAAGCAGGCTATCTGAAGATACACAGACAATAAAGAATGCCGCAACTACCAATCTCTCTGAGGCCTTGAGAAACTTATCAACTGCCTTTATTGGTCTCTCCTTCATGTTTGCAACATCATGGAAAACAGTGAGATCTTTTGCCCAAGAAGAACATGAAATAGCACGGTATTATGAAAAAGTCGAAGAAACGCTTAAGCTTGGACTTAAACAGGCTAAAGTGGTTGGACTCTTTTCTGGAGGCCTCAATGCAGCATCTACGCTGTCAGTTATCGTAGTCGTTATATACGGAGCTAACTTGACAATCAAGGGCGCCATGTCTGCGGGTGATCTTACATCTTTCATTCTTTATAGTCTCACAGTGGGATCTGCTGTATCTGGTCTGTCATCATTGTATACAGTAACAATGAAAGCTGCGGGCGCTAGCAGACGGGTATTTCAACTTCTGGATCGAGTCTCTTCCATGCCTAAGCCAGGAAATAAGTGTCCTTTGGGTGATCAAGATGGTGAAGTGGAACTAGATGATGTTTGGTTTGCCTATCCATCACGTCCAAGTCATACAATACTCAAGGGAATCACATTGAAACTGCAGCCTGGCTCTAAGGTTGCTCTTGTTGGTCCTAGTGGTGGTGGAAAGACTGCTATAGCTAACTTGATTGAAAGATTTTATGACCCAACCAAGGGAAAGATCCTGCTGAATGGGGTTCCTCTGGTAGAAATATCACATCAGCATCTACACAAAAAGATCAGTACAGTGAGTCAGGAACCTATCCTTTTCAACTGTTCCATAGAGGAGAACATAGCTTATGGACTTGATGGCAAAGTTGATCTTGTTGATATAGAAAATGCAGCTGATGCCATGGATTCTCTAATGAAGGGAAGAACAGTTCTAGTTATAGCTCATAGGCTATCTACTGTTAAAAGTGCAAATATTGTAGCAGTTATTTCTGATGGTCAAATAGTTGAAAGAGGCACCCATGATGAACTTCTCAGCAAGAATGGTGTTTATACTGCATTAGTCAGAAGACAACTACAAACAGCAAAAAATGAAACTTAG 1623 0.4264 MSKIGQPLSEAMDPESDHHSKSIFGFIDICTSHEEIKGEEGEKDREKEVPFLLRKRTREHGNGLWERRKRDDASADQQLTDLEHGDALPAANVGFCRVLSLPKFGGKIIDIVSGDISTPEEKDKALDAVKSTILSIFMIVVVGSVSTALRAWLFSSASERVVARLRKRLFSHLINQEIAFYDVTRTGELLSRLSEDTQTIKNAATTNLSEALRNLSTAFIGLSFMFATSWKTVRSFAQEEHEIARYYEKVEETLKLGLKQAKVVGLFSGGLNAASTLSVIVVVIYGANLTIKGAMSAGDLTSFILYSLTVGSAVSGLSSLYTVTMKAAGASRRVFQLLDRVSSMPKPGNKCPLGDQDGEVELDDVWFAYPSRPSHTILKGITLKLQPGSKVALVGPSGGGKTAIANLIERFYDPTKGKILLNGVPLVEISHQHLHKKISTVSQEPILFNCSIEENIAYGLDGKVDLVDIENAADAMDSLMKGRTVLVIAHRLSTVKSANIVAVISDGQIVERGTHDELLSKNGVYTALVRRQLQTAKNET 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0645 540 Pfam ABC transporter transmembrane region 102 231 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele18g0645 540 Pfam ABC transporter 378 480 IPR003439 GO:0005524
Lele18g0645 540 SUPERFAMILY ABC transporter transmembrane region 98 339 IPR036640 GO:0005524|GO:0016020
Lele18g0645 540 SMART AAA_5 387 514 IPR003593 -
Lele18g0645 540 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 360 531 IPR003439 GO:0005524
Lele18g0645 540 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 100 231 - -
Lele18g0645 540 Gene3D ABC transporter type 1, transmembrane domain 231 357 IPR036640 GO:0005524|GO:0016020
Lele18g0645 540 Gene3D - 474 538 IPR027417 -
Lele18g0645 540 Gene3D - 358 473 IPR027417 -
Lele18g0645 540 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 351 532 IPR027417 -
Lele18g0645 540 Gene3D ABC transporter type 1, transmembrane domain 90 230 IPR036640 GO:0005524|GO:0016020
Lele18g0645 540 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 99 326 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0645 Lele-ChrLele18 3865565 3873128 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0645 474 540 Calmodulin-binding Proteins AT2G36910 53.623 2.86e-14 74.3