Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0636 ATGGCGAAATCAGCTACCCCAGATGCGATTTCGATATTGCTTGCCAACCCGTCACCAGATTCCTCCTTGGAGCTTCCTGAAATCATCGTCCAAGTTCTGGATCTCAAGCAAAGCGGCAACAGATTCATGTTCACCGCTAACGATGGGAAGATGAAGCTAAGGGCAATCCTCCCTTCTAATCAGAATTCCCAAGTCATTTCGGGAAGTATTCAGAACCTGGTTCTTATTCGCATAGTTGATTATACTCTCAATGATATCCCAAACAAGTCAGAGAAATATCTTATTGTTACAAAATGTGAATCGGTCTCTCCTGCTCTCGAAATGGAGATAAAAACAGAAGTCAAGAGTGAGTGCCCCGCCATGCTTTTGAATCCAAAGCAAGAGGGTGAAACCAAAAGTGAGGTGAAAAGTGAAGCTGCCGGCATTATTTTGAGACCGAAGCAAGAAATGGTGTCCAAATCTGCCGCTCAGATTGTACATGAACAACATACAAACATTGCCCCTACTGCACGGATGGCCATGACACGCAGGGTGCGCCCTCTTGTTTCCTTAAATCCTTATCAGGGTAATTGGACGATAAAGGTTCGTGTAACAAGCAAAGGGAACATGCGTTCCTACAAGAATGCTAGAGGAGAAGGTTGTGTCTTCAACGTGGAATTGACAGATGAAGATGGCACTCAAATTCAAGCAACAATGTTTAATGAGGCTGCCAGGAAATTTTATGACAGATTTGCGCTTGGGAAGGTTTACTACATTTCCAAGGGAACTTTAAAGGTTGCTAACAAACAGTTCAAAACTGTCCAAAACGATTATGAGATGACATTGAATGAGAATTCTGAGGTGGAAGAGGCAGCCAATGAAGAAAGTTTTGTTCCAGAAACAAAGTTTAACTTTGTCCTGATTGATCAGCTGGGTCCTTTTGTCAATAGGGGTGACCTTGTTGATGTCATAGGAGTTGTTCAGAATGTGTCTTCCACCATGAGCATTCGAAGGAAGAGTAACGATGAGAGTATTTCAAAGCGTGATGTTACTATTGCTGATGAAACAAAGAAGACAGTGGTTGTGTCTTTGTGGAGTGAACTTGCAACTAATGTAGGGCAAGAATTGCTGGACAATGCTGATAAATCTCCAATAGTTGCAATCAAGTCTCTCAAAGTTGGGGATTTTCAGGGTGTTTCCTTGTCAACTATAAGCAAAAGTGTAGTTCAGATAAATCCTGATATACCTGAAGCAAAAAAGCTTAGATGCTGGTATGAGTCTGAAGGTAAAGACGCTCCAATGGCTTCCATTGGCTCTGGTGCATCTGCAACAAAAAATGGAACGAGATCAGTGTACTCTGACCGTATTTCACTAGCTCAAATAACCTCTAACAAATCCTTGGGAGAGGACAAGCCTGCATTTTTCAGTATCAGGGCACATATAAGCTCCATTAGGCCTGATCAGACAATGTGGTATCGGGCTTGTACAACTTGCAACAAGAAAGCCACTGAAGCCATTGGTTCTGGCTATTGGTGTGAAGGCTGCCAGAAAAATGTTGAAAGCACTTTAAGGTATATTTTGGTTGCAAGAGTTTCTGATGCAAGTGGTGAAGCTTATGTCTCGATCTTCAATAATGAAGCTGAGGAGATTGTTGGGTGTTCTGCTAATGAGCTAGATAGCCTAAAATCACAGGAGGGAGAAGATAATCCATACCAAATGAAGTTGAAACAAGCGACTTGGACCCCTCATCTATTCCGTGTTAGTGTTTCTCAGAATGAGTATATGAACGAGAAGAGGCAAAGGATAACTGTCCGAGCTGTTGCTCCTGTTGATTATGCTGCTGAGTCAAGAATTCTCCTCGAAGAGATTTCAAAGATGACAGCTTCACAATAA 1872 0.4225 MAKSATPDAISILLANPSPDSSLELPEIIVQVLDLKQSGNRFMFTANDGKMKLRAILPSNQNSQVISGSIQNLVLIRIVDYTLNDIPNKSEKYLIVTKCESVSPALEMEIKTEVKSECPAMLLNPKQEGETKSEVKSEAAGIILRPKQEMVSKSAAQIVHEQHTNIAPTARMAMTRRVRPLVSLNPYQGNWTIKVRVTSKGNMRSYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDRFALGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEAANEESFVPETKFNFVLIDQLGPFVNRGDLVDVIGVVQNVSSTMSIRRKSNDESISKRDVTIADETKKTVVVSLWSELATNVGQELLDNADKSPIVAIKSLKVGDFQGVSLSTISKSVVQINPDIPEAKKLRCWYESEGKDAPMASIGSGASATKNGTRSVYSDRISLAQITSNKSLGEDKPAFFSIRAHISSIRPDQTMWYRACTTCNKKATEAIGSGYWCEGCQKNVESTLRYILVARVSDASGEAYVSIFNNEAEEIVGCSANELDSLKSQEGEDNPYQMKLKQATWTPHLFRVSVSQNEYMNEKRQRITVRAVAPVDYAAESRILLEEISKMTASQ 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0636 623 CDD RPA1_DBD_C 451 618 IPR013955 -
Lele18g0636 623 SUPERFAMILY Nucleic acid-binding proteins 446 619 IPR012340 -
Lele18g0636 623 Gene3D - 431 619 IPR012340 -
Lele18g0636 623 Pfam Replication protein A OB domain 308 405 IPR031657 -
Lele18g0636 623 Gene3D - 6 112 IPR012340 -
Lele18g0636 623 CDD RPA1_DBD_B 313 419 - -
Lele18g0636 623 FunFam Replication protein A subunit 290 429 - -
Lele18g0636 623 CDD RPA1_DBD_A 180 283 - -
Lele18g0636 623 Pfam Replication factor-A protein 1, N-terminal domain 6 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Lele18g0636 623 Gene3D - 177 286 IPR012340 -
Lele18g0636 623 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 6 618 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lele18g0636 623 SUPERFAMILY Nucleic acid-binding proteins 179 287 IPR012340 -
Lele18g0636 623 FunFam Replication protein A subunit 177 286 - -
Lele18g0636 623 SUPERFAMILY Nucleic acid-binding proteins 1 108 IPR012340 -
Lele18g0636 623 PANTHER REPLICATION FACTOR A 1, RFA1 191 582 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lele18g0636 623 Pfam Replication factor-A C terminal domain 467 611 IPR013955 -
Lele18g0636 623 FunFam Replication protein A subunit 4 114 - -
Lele18g0636 623 Gene3D - 291 430 IPR012340 -
Lele18g0636 623 SUPERFAMILY Nucleic acid-binding proteins 296 424 IPR012340 -
Lele18g0636 623 Pfam OB-fold nucleic acid binding domain 191 277 IPR004365 GO:0003676
Lele18g0636 623 FunFam Replication protein A subunit 433 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0636 Lele-ChrLele18 3806506 3809796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0636 1 623 Core DNA Replication Machinery Family AT5G08020 66.613 0.0 878