Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0627 ATGTACAGGCTCCTCGCGCTCACTTCTTTGAATCAGAAAAACATACTACAAATGGTGCGGTCTGTTTGGCAGGCTGATGGATTAAGAGGCTTTTACAGGGGTATAACGCCAGGGGTTACTGGGTCTCTTGCTACTGGGGCGACATATTTTGGTGTCATAGAGTCCACTAAAAGGTGGATTGAGGACCCACACCCTAGTCTTGGTGGCCACTGGGCACATTTCATTGCTGGAGCTGTTGGAGATACACTTGGTTCTTTTGTGTATGTTCCATGTGAAGTGATAAAGCTACGCATGCAGGTCATGTTTTACGAAGCTATGAAAGATGTGACAGAATATGGAAAGCAAAGATGGATATCAAGCTCGAATTGGCATGTTAACAGTTCTTTAGAGGGACTTGTGTTTGGAGGCTTAGCTGGTGGTCTTAGTGCTTATCTCACAACTCCCTTGGATGTGATCAAAACAAGATTGCAAGTGCAGGGTTCAGCCATAAGTGGTTGGTTTGACGCGATCCGGAACATATGGACTATGGAAGGCATGAAGGGGATGTTTAAGGGTAGCATCCCTAGGATTACGTGGTACATTCCTGCTTCTGCGCTAACTTTTATGGCTGTGGAATTTCTCAGAGATCATTTTAATGAAAGAGATGCATGTAAAAATTATCAAGACGTTGCTGCATTATCAGTGGACAAGAATAAATCTTCTGTACGAGAGGTTGGTCTCTTCTTCCTCTCTTTGTGGGTGATCATTCGTATTATTGGTTCTGGATTCGATTCATCTGCTAAGGATCATCTCGCGATTGACAAACTAAAAGTGGCATCGGGAAATCGATGCCATTATGAAGTCCTCGGTCTCGAACGAGACTGTACCGCCGACGAGATACGGTCGGCGTACCGGCGTCTTGCCCTTCTGTGCCATCCTGACAAGCTTGCGAAATCCGGCTTATCTCACGCCGAAGCCACATCTCTATTCCAGGAGCTCCAACGTGCCTACGATGTCCTTTCCGACCCCAAAGATCGAGCGTGGTACGATTCCCTGCGATCTAAGATTCTCTATTCTGACCCCAATTCAGTACGAAACTCGGCCTCCAACTCGTTCACCCCGGACCTGTCTTCCTTCTTCTCTGACGGTGTTTATTCTGGGTATTCGGACACTGGCAAGGGGTTCTATAAGGTCTATTCCGACGTTTTTGGTAAAATTCATGCCAACGAAATTAACTTCGTGAAGAAATTAGGGCTTGGTATTGACGTGGTTCAATCATCACCAGTAATGGGAAATTTGGATAGCCCTTATGCCCAAGCTTCAGCTTTCTACAATTACTGGTTGGGATTTTCTACGGTTCTGGATTTTTCCTGGATGGACGCATATGATATTGTCATGGCTAGTCCCAACAGGAAGTCGAGGCGGCTTATGGAGGAAGAGAACAAGAAGATCAGAAAGAAGGCAAAGAAAGAGTACAATGACACTGTCCGGAAGTTGGCTGAGTTTGTGAAGAAGAGGGATAAGAGGGTGATCGATATGAAGGTGAAGAAGGAAATGGAGGTGGAAAAGAAGAAAGAGAAAGAGAGGGAGAGGAAGAAGCAGATGGAGAAGGAGAAGAGGGAGAGAGCAATGACGTATGAAGAGCCCGATTGGTTCAAAACAGAGGAGTATGAAGAAGATGAGGCTGACTGGTTCAAGGAGGAGAGTACGAGAAAGAATAATGCCCAGAATTGGTTTTATTGTGTATTGTGTAGGAAGAAGTTCAAGAGTGAGAAGCAATGGAAGAACCATGAGCAATCAAAGAAGCATAAAGAGAAAGTTGCTGAATTTAGGCGACATCGAAAAATCTTGGCCAATGGCCACACTGTGAGGCCTGCTGTGAGCAGTTTGCATGATTCAAGGTGA 1884 0.4538 MYRLLALTSLNQKNILQMVRSVWQADGLRGFYRGITPGVTGSLATGATYFGVIESTKRWIEDPHPSLGGHWAHFIAGAVGDTLGSFVYVPCEVIKLRMQVMFYEAMKDVTEYGKQRWISSSNWHVNSSLEGLVFGGLAGGLSAYLTTPLDVIKTRLQVQGSAISGWFDAIRNIWTMEGMKGMFKGSIPRITWYIPASALTFMAVEFLRDHFNERDACKNYQDVAALSVDKNKSSVREVGLFFLSLWVIIRIIGSGFDSSAKDHLAIDKLKVASGNRCHYEVLGLERDCTADEIRSAYRRLALLCHPDKLAKSGLSHAEATSLFQELQRAYDVLSDPKDRAWYDSLRSKILYSDPNSVRNSASNSFTPDLSSFFSDGVYSGYSDTGKGFYKVYSDVFGKIHANEINFVKKLGLGIDVVQSSPVMGNLDSPYAQASAFYNYWLGFSTVLDFSWMDAYDIVMASPNRKSRRLMEEENKKIRKKAKKEYNDTVRKLAEFVKKRDKRVIDMKVKKEMEVEKKKEKERERKKQMEKEKRERAMTYEEPDWFKTEEYEEDEADWFKEESTRKNNAQNWFYCVLCRKKFKSEKQWKNHEQSKKHKEKVAEFRRHRKILANGHTVRPAVSSLHDSR 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0627 627 Pfam Mitochondrial carrier protein 129 213 IPR018108 -
Lele18g0627 627 Pfam Mitochondrial carrier protein 12 61 IPR018108 -
Lele18g0627 627 PRINTS DnaJ domain signature 279 297 IPR001623 -
Lele18g0627 627 PRINTS DnaJ domain signature 318 338 IPR001623 -
Lele18g0627 627 PRINTS DnaJ domain signature 297 312 IPR001623 -
Lele18g0627 627 Pfam Zinc-finger double-stranded RNA-binding 572 597 IPR022755 -
Lele18g0627 627 Gene3D DnaJ domain 265 367 IPR036869 -
Lele18g0627 627 Coils Coil 509 534 - -
Lele18g0627 627 MobiDBLite consensus disorder prediction 515 534 - -
Lele18g0627 627 Gene3D Classic Zinc Finger 560 613 - -
Lele18g0627 627 CDD DnaJ 277 335 IPR001623 -
Lele18g0627 627 ProSitePatterns Nt-dnaJ domain signature. 323 342 IPR018253 -
Lele18g0627 627 SMART ZnF_U1_5 569 603 IPR003604 GO:0003676|GO:0008270
Lele18g0627 627 Gene3D Mitochondrial carrier domain 102 229 IPR023395 -
Lele18g0627 627 Gene3D Mitochondrial carrier domain 4 101 IPR023395 -
Lele18g0627 627 ProSiteProfiles Solute carrier (Solcar) repeat profile. 126 210 IPR018108 -
Lele18g0627 627 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 272 606 IPR044648 -
Lele18g0627 627 SMART dnaj_3 276 338 IPR001623 -
Lele18g0627 627 Pfam DnaJ domain 278 343 IPR001623 -
Lele18g0627 627 SUPERFAMILY beta-beta-alpha zinc fingers 565 606 IPR036236 -
Lele18g0627 627 SUPERFAMILY Chaperone J-domain 269 342 IPR036869 -
Lele18g0627 627 ProSitePatterns Zinc finger C2H2 type domain signature. 574 596 IPR013087 -
Lele18g0627 627 ProSiteProfiles dnaJ domain profile. 277 346 IPR001623 -
Lele18g0627 627 SUPERFAMILY Mitochondrial carrier 10 207 IPR023395 -
Lele18g0627 627 Coils Coil 467 487 - -
Lele18g0627 627 ProSiteProfiles Solute carrier (Solcar) repeat profile. 1 59 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0627 Lele-ChrLele18 3750669 3756987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0627 273 604 C2H2 Transcription Factor Family AT1G74250 67.164 1.40e-135 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele18g0627 Mito_carr 3.2e-23 No_clan