Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele18g0618 | ATGGAAGAAGGTCGAGCAGTGTCGAAACACGTGTGTAAATTCTGCAGTAAGAGCTTCCCTTGTGGTAGATCTTTGGGAGGTCACATGAGGTCGCACATCACGAATGTTTCATCAGCTGAAGTAGAGGAGAAACTCACCTCGGCGGCGACGACGAAGAAGATTCAATCTGTGATCAATGGCGGAGCTGGAAGCATCAGTAAGGTTGGAGAGTACGATCTCAGAGAGAATCCGAAAAAGAGTTGGAGATTCGCAGATTCATCAAGAAGCGAAGATACACCACTAGTCGTCACTGAGGACAAATTCTGCAAAGAGTGTGGTAAAGCGTTTCACTCTTGGAAAGCTCTTTTTGGTCACATGAAATGCCATTCTGAGAAAGCTTCCATTAACAACAATAACAACAACAACTTGGAGAATCAAGATTCTGCTAGCCAGAAAGTGGTCACAGATAGCCAATCAGACAACGAAGGCACTGGCAATAATAATCCCAACCGAAGAAGAAGATCCAAGAGAAGAACGAGGTTCGTGACCACTGCTTCAACTTCGTCTCTGTCGTTTGCGAATCCTTCGTCCTCTGTTTCTGAGGTTGAACAAGAACAAGAAGAGGTTGCTATGAGCTTGATGATGCTAAGCAGAGACGTTGGTCATTGGGGTGGTTTGAATTCTCTTGTTGAGTCCTCTGATAACAATTCTGCCTATTTCGAAGCTCGATCTTATGTGGTTCGAACTCATCTGAGTAGCAAAATTGAAACAGGTAAAGTAAAACTGACTATTGGCAGTAATTCTGATTCTGCGAATTTGAACTCTAAAGGGAAGAAACATGAGAGTTTAGCGATCAAAGCGATGAAAACAATAGTTTCCATTAATGGGTTGGTCACGAACTGTAAAGAAAAGAAGCATCATCATGAGCAGCTTGATAACCAGTCGACATTGGAGGATTCTGAAGACGAAGAAGAGTGGAAGGGTGAACACAATGGAACAGAACTAGATTCATCAGTAAAGAGGAGGTTTTCAGAATCTGAGGTGAAGTCATCAAATAATTGCAAGAAAGGGAAGTTCAAGTGTACTACTTGCAACAAGATCTTCCATTCGTACCAAGCTCTGGGAGGCCATAGATCTAGTCATAAGAAGCTCAAAGGCTGCTCTGCTTCAAGAAACGAGAGCAGTGAAAACAGCATAGAAACGGACCTTAACAATGGCTATGTAATCGAGAAACAAGAGCTTATTACTGGTTCTGTTAATTTTGAGAACGAGGAAGAGATAATCACAGAACCCAATAAGAAGAACAAAGTACACGAGTGTCCAATTTGCCTCAAGATTTTCCCATCTGGGCAAGCTTTGGGTGGTCACAAGAGATCTCATTTCACTTCTGAAGGATCACTAGTACTTGAGAAACCAGTTCAGGAAATCAGAGACTTTATTGATCTCAATCTTCCAGCTTCTGCAGAAGAAGGAAGCAACAGTCAATTAATGGAGAATTACCCACCACCATGGTGGGTTACCAAGCAAGAGGCGGCACTGGTTGGCCTCATATCTAACTGA | 1539 | 0.4276 | MEEGRAVSKHVCKFCSKSFPCGRSLGGHMRSHITNVSSAEVEEKLTSAATTKKIQSVINGGAGSISKVGEYDLRENPKKSWRFADSSRSEDTPLVVTEDKFCKECGKAFHSWKALFGHMKCHSEKASINNNNNNNLENQDSASQKVVTDSQSDNEGTGNNNPNRRRRSKRRTRFVTTASTSSLSFANPSSSVSEVEQEQEEVAMSLMMLSRDVGHWGGLNSLVESSDNNSAYFEARSYVVRTHLSSKIETGKVKLTIGSNSDSANLNSKGKKHESLAIKAMKTIVSINGLVTNCKEKKHHHEQLDNQSTLEDSEDEEEWKGEHNGTELDSSVKRRFSESEVKSSNNCKKGKFKCTTCNKIFHSYQALGGHRSSHKKLKGCSASRNESSENSIETDLNNGYVIEKQELITGSVNFENEEEIITEPNKKNKVHECPICLKIFPSGQALGGHKRSHFTSEGSLVLEKPVQEIRDFIDLNLPASAEEGSNSQLMENYPPPWWVTKQEAALVGLISN | 512 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele18g0618 | 512 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 100 | 127 | IPR013087 | - | |
| Lele18g0618 | 512 | MobiDBLite | consensus disorder prediction | 130 | 194 | - | - | |
| Lele18g0618 | 512 | SUPERFAMILY | beta-beta-alpha zinc fingers | 10 | 122 | IPR036236 | - | |
| Lele18g0618 | 512 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 10 | 32 | IPR013087 | - | |
| Lele18g0618 | 512 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 102 | 122 | IPR013087 | - | |
| Lele18g0618 | 512 | Gene3D | Classic Zinc Finger | 7 | 122 | - | - | |
| Lele18g0618 | 512 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 12 | 32 | IPR013087 | - | |
| Lele18g0618 | 512 | SUPERFAMILY | beta-beta-alpha zinc fingers | 352 | 453 | IPR036236 | - | |
| Lele18g0618 | 512 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 433 | 453 | IPR013087 | - | |
| Lele18g0618 | 512 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 431 | 458 | IPR013087 | - | |
| Lele18g0618 | 512 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 352 | 379 | IPR013087 | - | |
| Lele18g0618 | 512 | MobiDBLite | consensus disorder prediction | 174 | 194 | - | - | |
| Lele18g0618 | 512 | MobiDBLite | consensus disorder prediction | 319 | 335 | - | - | |
| Lele18g0618 | 512 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 1 | 484 | - | - | |
| Lele18g0618 | 512 | Gene3D | Classic Zinc Finger | 349 | 453 | - | - | |
| Lele18g0618 | 512 | Pfam | C2H2-type zinc finger | 10 | 32 | - | - | |
| Lele18g0618 | 512 | Pfam | C2H2-type zinc finger | 102 | 124 | - | - | |
| Lele18g0618 | 512 | Pfam | C2H2-type zinc finger | 430 | 453 | - | - | |
| Lele18g0618 | 512 | Pfam | C2H2-type zinc finger | 352 | 376 | - | - | |
| Lele18g0618 | 512 | SMART | c2h2final6 | 431 | 453 | IPR013087 | - | |
| Lele18g0618 | 512 | SMART | c2h2final6 | 352 | 374 | IPR013087 | - | |
| Lele18g0618 | 512 | SMART | c2h2final6 | 100 | 122 | IPR013087 | - | |
| Lele18g0618 | 512 | SMART | c2h2final6 | 10 | 32 | IPR013087 | - | |
| Lele18g0618 | 512 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 354 | 374 | IPR013087 | - | |
| Lele18g0618 | 512 | MobiDBLite | consensus disorder prediction | 298 | 335 | - | - | |
| Lele18g0618 | 512 | MobiDBLite | consensus disorder prediction | 130 | 161 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele18g0618 | Lele-ChrLele18 | 3704535 | 3706073 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele18g0618 | 9 | 237 | C2H2 Transcription Factor Family | AT1G26610 | 44.398 | 2.69e-41 | 152 |
Transcription factors information