Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0617 ATGTTCCCGGTGCCGGCACTTGACCACTGGGCGCTGATGGTAATGGGACATCATCGGCAAATATCCAGGTGCATTCATTGGGGGAGATGGCGGACTGGGTGGGATGAGGGTGACGGCTCCGGCAAGAAGGTGTGGCTAAAAGTGGTGGTGACGGCTTCTGATGTGGAGGTGAAAGTGGTGGAGCTGGGGGGAGAAGAGAGAGCTGCCAAAGTCTCTCTTGGGACTTCAGCTGTGTACGCAGGTTTTCCTTCTGCGTGGAATGACACCTTGGTGAGTCAACTTTTGCCAAACCAAACCAAAGCTAATGAACCAATGCGATGTGAGGTTTGCAAAATTGAATGCACTAGCAAAGATGTTTTTGTAAAGCACGTATCAGGAAAGAAGCACAAGAATATGCAGCTGCTAAATAACCCCACCAATACAATAATACGAGGAGCCTCTTATGCAAGTTTACAAAGTCAAATAAGTAGGGCCAGAGGACAAGATTTATTTGGTGTAGTGAGCAAAGAGTTAGAGTCTAAGAAACAGAAGCTTGTGAGTGGCGGTGCAGCAGTTGATTCAGTAAGGGTTTGCACGATATGTAATGTTGCTTGCAACAGTCAAGATGTATATCACAAACATCTATCTGGGAAAAAGCATGCTGCTCAGATTAGCTTGATGTCTGATAATGGGATTGGTCCTTATCTTGCCGCATTTAACCGTCATGGCACTGGTCCTTCGAAAAAAGGCCCGAAGAAAATTAAGTTTACCCAACCTGCATGGTGTGAACTTTGCAAGATCTGTTGTAACAGCAGGGATGTATATATGACACACTTAGCAGGGAAGAAACACCTGAGGAACCTGGAGTTGCTGTCAAAATCAAATAATGCTTTGCAACGTGCAACTAATCTAGTTATTGGACCCCAGGAAAAGCCAAACACTTGTAAAGATGAAGGGATAAGAGATTCACATAAGCCAAATAAAGCAGCCATGGTAGAGGATATTGAGGCAAAGAAACGTAAACTTGTGAAAGGTGGGGCTGCAGAAACTGATATTAGAACATGCACTCTATGTAAAGTGCTAGTAGAACTACATGAGAAGTCCTTATCAGAGGCTAGCATAAAAGATAAGAAACACATACAAAGGTTGGAAGAAGAGCTGTTGAACTGCTCTCAAGAAATAGATTACCTTAAGGATCAGCTTAATGGAAGGAACATGGCGGTGAAATACCTGCAAGAGCTTGTTTACAGCCTCAAATTGAAAATAAAGGATATGGAAGGCTTACAAGATGAGGTTTTCAGGTTAAAGGAGGAGCTGCAGAAATCCAATTCTGAGCAATTTTTCTTGTTGAAGGAATTAGAGACTAAAGAAATGGAATTGGAGAAGTCGACACTGTCCGTAGAGAAATTGGAGGAATCAATTTCATCCATGGCATTAGAGTCTGAATGTGAAGTAGAGTGTGTGAAACTTGACATGATGGCCTTGGAACAGAGTCATTTTGAGGCTAAGAAAATACAGGAGGAAGCTCTAGAGGAAAACACTAGAATGAGTAGATTGATTGAAGAGCTTCAGTATAAATTGCAGGAAGCCCAAAAAAATATTGTCTCTCTAAATGAGGAAAACAGGAAACTTAAGAATAAGATTGTTGCAGTCAACATGAACACTAAAAAATTTTCTCAGAAGTTTGAAGAGTGGCTAGTAAACAAGGACAGATCACAACCCAATGGTCAGTCTTCCTTGAGCGAAGAAGAGAAGGATTCAGACATATCAAAGGATATAAGTGTTTATGGAGAAGTATTGGGTCCACTCCTTGGAAGGCTATCATTGGCGTTGGAAACAGATGTAGGTATTAAAGAGGAGATGGGGAAGATGTCATATCAGATGCAAAAGTATAAAATACTTGTGGAGAAACTTAAGGAAGAATTGAGAGAAGAAAAGTTGAAGGCCAAAGAAGAAGCAGAGGACCTTGCTCAAGAAATGGCAGAGCTTAGATATCAAGTTACAGGTTTGTTAGAAGAAGAATGTAAGCATCGTGCTCGCATCGAACAGGCTTCTTTGCAAAGAATTGCCGAGTTAGAAGCACAGCTTCAAAGAGAACAGAGAAAATCTTTATTTGCTGTCAGCCTCCCAGAAATGTAG 2118 0.4178 MFPVPALDHWALMVMGHHRQISRCIHWGRWRTGWDEGDGSGKKVWLKVVVTASDVEVKVVELGGEERAAKVSLGTSAVYAGFPSAWNDTLVSQLLPNQTKANEPMRCEVCKIECTSKDVFVKHVSGKKHKNMQLLNNPTNTIIRGASYASLQSQISRARGQDLFGVVSKELESKKQKLVSGGAAVDSVRVCTICNVACNSQDVYHKHLSGKKHAAQISLMSDNGIGPYLAAFNRHGTGPSKKGPKKIKFTQPAWCELCKICCNSRDVYMTHLAGKKHLRNLELLSKSNNALQRATNLVIGPQEKPNTCKDEGIRDSHKPNKAAMVEDIEAKKRKLVKGGAAETDIRTCTLCKVLVELHEKSLSEASIKDKKHIQRLEEELLNCSQEIDYLKDQLNGRNMAVKYLQELVYSLKLKIKDMEGLQDEVFRLKEELQKSNSEQFFLLKELETKEMELEKSTLSVEKLEESISSMALESECEVECVKLDMMALEQSHFEAKKIQEEALEENTRMSRLIEELQYKLQEAQKNIVSLNEENRKLKNKIVAVNMNTKKFSQKFEEWLVNKDRSQPNGQSSLSEEEKDSDISKDISVYGEVLGPLLGRLSLALETDVGIKEEMGKMSYQMQKYKILVEKLKEELREEKLKAKEEAEDLAQEMAELRYQVTGLLEEECKHRARIEQASLQRIAELEAQLQREQRKSLFAVSLPEM 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0617 705 Pfam Zinc-finger of C2H2 type 107 129 - -
Lele18g0617 705 Pfam Zinc-finger of C2H2 type 191 213 - -
Lele18g0617 705 Pfam Zinc-finger of C2H2 type 254 277 - -
Lele18g0617 705 SMART c2h2final6 253 277 IPR013087 -
Lele18g0617 705 SMART c2h2final6 189 213 IPR013087 -
Lele18g0617 705 SMART c2h2final6 105 129 IPR013087 -
Lele18g0617 705 Coils Coil 411 438 - -
Lele18g0617 705 Coils Coil 373 393 - -
Lele18g0617 705 Coils Coil 621 666 - -
Lele18g0617 705 Coils Coil 675 695 - -
Lele18g0617 705 SUPERFAMILY beta-beta-alpha zinc fingers 184 219 IPR036236 -
Lele18g0617 705 SUPERFAMILY beta-beta-alpha zinc fingers 251 284 IPR036236 -
Lele18g0617 705 SUPERFAMILY beta-beta-alpha zinc fingers 97 132 IPR036236 -
Lele18g0617 705 Coils Coil 495 547 - -
Lele18g0617 705 SMART ZnF_U1_5 102 136 IPR003604 GO:0003676|GO:0008270
Lele18g0617 705 SMART ZnF_U1_5 250 284 IPR003604 GO:0003676|GO:0008270
Lele18g0617 705 SMART ZnF_U1_5 186 220 IPR003604 GO:0003676|GO:0008270
Lele18g0617 705 Coils Coil 446 466 - -
Lele18g0617 705 Gene3D Classic Zinc Finger 166 219 - -
Lele18g0617 705 Gene3D Classic Zinc Finger 237 283 - -
Lele18g0617 705 Gene3D Classic Zinc Finger 91 134 - -
Lele18g0617 705 PANTHER MYOSIN HEAVY CHAIN-LIKE PROTEIN 346 700 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0617 Lele-ChrLele18 3692099 3700568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0617 180 378 C2H2 Transcription Factor Family AT5G61190 26.131 2.34e-13 72.0