Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0612 ATGGTACTCACGGAAGAACAGAGAAAACAAGCCGAAGCTAATCGGTTAGCGGCCATCGAAAGACGAAAGGCAGTGTTAGAAGCTCGTGGAGAGAAAGACCCTTGGCAGCTCTTCAAGTGCCGTAAGATCTCTTCCGAATCGATTGCCAAGCCCACACCCACCGTTCCCCCCCACCAGCAACACCACTCCGTCTCCGTCGAGCCAGTTTCTGCCGCACATTTTCCCCATAAATTTTTGGTTAGGCTCGAAATATGCTCTCCCGATTCCTTCTCTGCAACTCCTCTGCCCCTTCGGGGTTCCCCCTATCCCGGAGAAGAATGGTGCTTGCAGAGACTGAGTGATCATTTGTCCAATGTCATGCCTTCACACTACACCCAGAATCATGATGGCAGAAACGCCTGTGTATATAACTTGAGGGATTACCATACTGTCCTTAAATGTTTGAAGATTGCCACGGACATAGAAGTTGAAGAAATTCCACGGGAAACTTTGATAGCCGTTCAAGCATTTTCGCATGTCTCTGGTACGGAGCGATGGATACCCTGCAGGCCCGAGCATTTGTCTGATGACAAGGTTGATGAGTTAATTGGGAAGCTACCAAGGACTCTGTTGGATGCACTGTTGCCTTTCCAAAGGGATGGTTTAAGATTTGGATTGAGAAGGGGTGGTCGGTGTCTTATTGCAGATGAGATGGGACTTGGGAAAACACTCCAGGCTATTGCTATTGCAGGATGTTTCTTGAATGAAGGTTCTATACTTGTTGTTTGTCCAGCTGTTTTGCGTTTTACATGGGCAGAAGAATTAGAGCGGTGGCTTCCCTTTTGTTTGCCTGCTGATATCCATCTGGTCTTTGGCCATCGAGATAATCCTGCTTATTTAACAAGATGCCCTAGAATTGTCGTTATTTCTTATACCATGCTCCATCGTTTGAGGAAGAGCATGCTTGAGCGAGAATGGGCTCTCTTGATTGTTGATGAATCTCATCACGTGCGATGTACGAGGAAGACCTCAGAACCAGGGGAGATAAATGCTGTTCTTGATGTAGCTTCAAAAGTCAAGCGCATAATACTGCTATCTGGGACACCTTCTTTGTCAAGGCCATATGACATATTTCATCAGATAAACGTGTTATGGCCTGGACTGCTGGGAAAGAATAAATATGCGTTTGCTAAAACTTATTGTGATTGTAAATATATCAAGGGAAACCATGGCAAAGTTTATGCGGATTTTTCAAAGGGTATTCGCTTGGAAGAGTTGAACGTGTTACTCAAGCAAACTGTTATGATAAGGCGTCTGAAGGAACATGTGCTGCTACAATTGCCACCAAAACGGCGGCAAATTATAAGGTTATTGTTGAAGAGATCAGATGTGGTTGCTGCAAAAACAGCAGTTGGAAAGTTAACTGTCAATACTTCCAAAAGTGACACCGAAGATGTGGTTTTGGACAGTTTTGATGAGCCTGATGGGATATTGAAGAGATCAGATGTAGTTGCTACAGAAACTGCAGTTGGGGTGTCAAATATTGATACTTCTGAAAGTGTCAATGAAGACATATTGGAAACTTTGGATGAATCTGAAGGGAAGCTTTCTTACCAGGAACTTGGAATTGCAAAGCTTTCTGGATTTCGTGAATGGCTTTCCCTCCATCCAGTCGTTGCCGAGCCAGAAAATGCTTCAAAAATGATAATTTTTGCTCATCACCACAAAGTTCTTGATGGGGTGCAGGAGTTAGCTTGTGAGAAAGGGATTAGTTTTGTCCGAATTGATGGAAACACACTTGCTAGGGATAGGCAGTCAGCAGTGGTGTCATTTCGTTCAAGACCAGAGGTTAAAATTGCAATAATAGGTATTTTAGCAGCAGGATTTGGACTTGATTTCTCAGCAGCACAAGATGTCGTGTTCTTGGAGCTTCCTCAGTGCCCAACCCAGATGCTTCAGGCTGAGGATAGAGCTCATCGACGAGGGCAAACAAATGCAGTCAATGTATATATCTTTAATGCAAAGGATACTTGGGATGAGTCGCATTGGAAAAATCTGAACAAAAGTTTGCACCGTGTTTCATCTACAACAGATGGTAAATATGATGCGATGAAAGAGATACAGGTTGAAGGTGTTTCTTACTTGGACACATTCTTCAAAACCAATAGAAGCTATGAAGAGCAATCTGCATCTGACGAAACTTCTGAACAGATGACCACGCTGCCAGATTTTGCCTCAGTTTCAAATTTGCAACCTTCCCAAGCAAATTCTAAGGAATCAGAAGCAAAATTGGGTGATCAAGCTGATAAGCAGACTTGCTTTGCTGACAAGGTTTCCTGCCCAGAATCAGGCGATGCTTCTATTTTGGATGTAAATTTAGATGTAGATATTTTTTACACTGAGGAAAAATTCTCTGGTTTTGACATGAGTAAGCTGGACAAAAGTTATGGAAGCAAAGATCAGATGATAGAATTTATTCAGAACAGTTTTGAAGATGATAATCAACTAGAAGAGAATAAAAAATCATCAACTATAAAAGCAGATGACTACCAACCTGTTCAGCCAATTGAAGCTGAAGAAAGTTCCTCTCCTCACGTTGAATCTCTACGATTTGAGGTGAGCCCATACACCGGAAGGATCCACTCGTATACTTGCATTTTGGGTACAGATACAAGACCAAGACCGCTTTGTAAGAATTTCCGACCAGAAGAACTTGAGTTGCTCAGTTCCCTTTCTGGCGATGATAAAAAGAAAAAGGAGATTTCTACCGGGGACAATCCTGCTTTTACAAATGCTCTTTTGGAATTTTTAAATGAATGGAAGAAATTAAGGCCAATTGAGCGAAAGAAGTTACTAGGAAAGCCATTACAACTTCCCTTGGCTGTTGAATTGTGCTACTTGAGTGAAACTAGTAACCACAACAAGAAGGGATTATTAAATAGTGGAAGCAAACGGCGCATGACTCCTTTAGTGGAGATAAGCCATCCTTTACCATCAGATGCTGTTTGGAGAAAGGTCTATCTGCGAAGTGGCAATGGTAAGAAGGAGAAAGAATACACTCAAGGTTGGACTACAGATGAGCCACTCTGTAAGCTTTGTCAAAAGACATGCATGGGTAACAATGCCAAGACTCCTGAATATTTTGAAGATCTTTTCTGCAACCTTGTCTGCTATGAAGAGTATCGCATGAGAACAAGCAACAAATTCCTTCGTCAGGAACTTTTTGAAGTTGAACATGGCGTGTGCTCGAGTTGCCATTTAGACTGTCATAAACTAGTTGAACATATAAGACCTTTACCACTAGCAAGGCGAAGAGAGTACATTGAGAAAGTGGCACCAAACGTTGCTAAGCGAAAGAACATGCTTGAGAAGCTTGTCAATGATCCAACTGAAGGCCATGCGTGGCATGCTGATCATATTGTTCCAGTATATCAAGGCGGAGGTGAATGTCGACTGGAGAATATGAGGACCCTTTGCGTGGCCTGCCATTATGATGTTACAACAGCACAGTGTGCTGAACGACGCAAAGAGAGAGCCAAGGCCAAGAAACAGCTAAAATTAGTAATGTGTGAGTTAAAAGCAGGTCAAACAAAGGTCGCCACAGGTTCTAATATTAAGGAGCGGGGTCTTCTTGAGGGACAAGAGGATGGAAATGATGAGCTCATTGTCAAGGTTCCTGGAAGTGCTTATTCGGTAGCCAATGGCTAA 3687 0.428 MVLTEEQRKQAEANRLAAIERRKAVLEARGEKDPWQLFKCRKISSESIAKPTPTVPPHQQHHSVSVEPVSAAHFPHKFLVRLEICSPDSFSATPLPLRGSPYPGEEWCLQRLSDHLSNVMPSHYTQNHDGRNACVYNLRDYHTVLKCLKIATDIEVEEIPRETLIAVQAFSHVSGTERWIPCRPEHLSDDKVDELIGKLPRTLLDALLPFQRDGLRFGLRRGGRCLIADEMGLGKTLQAIAIAGCFLNEGSILVVCPAVLRFTWAEELERWLPFCLPADIHLVFGHRDNPAYLTRCPRIVVISYTMLHRLRKSMLEREWALLIVDESHHVRCTRKTSEPGEINAVLDVASKVKRIILLSGTPSLSRPYDIFHQINVLWPGLLGKNKYAFAKTYCDCKYIKGNHGKVYADFSKGIRLEELNVLLKQTVMIRRLKEHVLLQLPPKRRQIIRLLLKRSDVVAAKTAVGKLTVNTSKSDTEDVVLDSFDEPDGILKRSDVVATETAVGVSNIDTSESVNEDILETLDESEGKLSYQELGIAKLSGFREWLSLHPVVAEPENASKMIIFAHHHKVLDGVQELACEKGISFVRIDGNTLARDRQSAVVSFRSRPEVKIAIIGILAAGFGLDFSAAQDVVFLELPQCPTQMLQAEDRAHRRGQTNAVNVYIFNAKDTWDESHWKNLNKSLHRVSSTTDGKYDAMKEIQVEGVSYLDTFFKTNRSYEEQSASDETSEQMTTLPDFASVSNLQPSQANSKESEAKLGDQADKQTCFADKVSCPESGDASILDVNLDVDIFYTEEKFSGFDMSKLDKSYGSKDQMIEFIQNSFEDDNQLEENKKSSTIKADDYQPVQPIEAEESSSPHVESLRFEVSPYTGRIHSYTCILGTDTRPRPLCKNFRPEELELLSSLSGDDKKKKEISTGDNPAFTNALLEFLNEWKKLRPIERKKLLGKPLQLPLAVELCYLSETSNHNKKGLLNSGSKRRMTPLVEISHPLPSDAVWRKVYLRSGNGKKEKEYTQGWTTDEPLCKLCQKTCMGNNAKTPEYFEDLFCNLVCYEEYRMRTSNKFLRQELFEVEHGVCSSCHLDCHKLVEHIRPLPLARRREYIEKVAPNVAKRKNMLEKLVNDPTEGHAWHADHIVPVYQGGGECRLENMRTLCVACHYDVTTAQCAERRKERAKAKKQLKLVMCELKAGQTKVATGSNIKERGLLEGQEDGNDELIVKVPGSAYSVANG 1228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0612 1228 SMART helicmild6 572 655 IPR001650 -
Lele18g0612 1228 Gene3D - 185 428 IPR038718 -
Lele18g0612 1228 Pfam HNH endonuclease 1124 1157 IPR002711 GO:0003676|GO:0004519
Lele18g0612 1228 FunFam SNF2 DNA repair protein, putative 181 430 - -
Lele18g0612 1228 Pfam Helicase conserved C-terminal domain 555 655 IPR001650 -
Lele18g0612 1228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 317 707 IPR027417 -
Lele18g0612 1228 CDD HNHc 1120 1160 IPR003615 -
Lele18g0612 1228 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 5 1177 - -
Lele18g0612 1228 CDD SF2_C_SNF 537 665 - -
Lele18g0612 1228 SMART ultradead3 203 387 IPR014001 -
Lele18g0612 1228 Pfam SNF2-related domain 225 475 IPR000330 GO:0005524|GO:0140658
Lele18g0612 1228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 431 IPR027417 -
Lele18g0612 1228 Coils Coil 9 29 - -
Lele18g0612 1228 Gene3D - 1051 1183 - -
Lele18g0612 1228 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 216 380 IPR014001 -
Lele18g0612 1228 Gene3D - 435 747 IPR027417 -
Lele18g0612 1228 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 547 701 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0612 Lele-ChrLele18 3655298 3665715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0612 560 708 RAD5 or RAD16-like Gene Family AT1G11100 35.099 1.48e-15 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele18g0612 SNF2_N 3.6e-23 CL0023