Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0601 ATGGCGGAAGAATCGCCTTCTTCTTCTTCAGTTGTGCTTACCATGGATGGCCTTGACGACGTCGAAAACTACGTTTGGGCACATGAACAAGGAGGTTTGGCATGGGACACATACCATCATATTTTTGAACTTGTGCAAAATGGCAACATGTCATTTCGGGAGAATCGGTTGGAAGAGGCAATCAACTTTTACTCAAGAGCAAATAGCATCAAACCTGGTGATCCTGTTATCCTCAGCAACCGATGTGCAGCTTATCTTAGGATTAGCAAATTGTTAAAAGACAGATCTCCATCAACTTCTGAATATAAACCATTGAGTGGGCTTGATCCTACAATACATGCTGAACTCTGTTTGAAGGATGCTGGGAAGCTTGTTGACCTGCAAAGTAATTCAGTAAGATCATACCTCTTAAAGGCTAATGCACTTTTTCTGTTAGAGAAATATGAAAAAGCCCGAGATGCTATTCTTTCAGGCCTTCAAGTTGATCCACTTAGCGATTCCTTGCGAGCTTCACTTAAAAGTTTGGATGCAGTATCTGCTAGTTTGATGGGGATGAGTAGACATGGACAGCCAGGGACGAGTACTCATAGACAACCGGAGCGCAACGATGACTTTGATTGCACTGTTTGCCTGAAGTTGTTATACGAACCCGTTACAACCCCTTGTGGACATTCTTTTTGCCATTTATGTCTATTTCAGTCGATGGATCATGGCAACAGATGCCCATTGTGCAGGACAGTTCTTTTTTTCAGTCCTCGAACGTGTTCCATCAGTGTGACATTGAAGAACATCATACAAAAGACCTTTCCGGAAGAATATGCGAAAAGGAAGCAAGAGCATGAAAGTTTGACCAACTTTGGCGCAGATTTGATTCCTCTATTTGTCATGGATGTTGTCATGCCATGTCAAAAGTTCCCACTCAATATATTTGAACCTCGATATAGACTTATGGTGAGAAGAGTAATGGAAGGGAATCATAGGATGGGAATGGCTATAATTGATTCTACAACAGGTTCCTTAGCTGAGTATGCTTGTGAAGTGGAAATCACAGAGTGTGAGCCACTTCCGGATGGGCGTTTCTATATAGAGATTGAAAGTCGCAGGAGATTTCGCATAATCCGGTCTCGGGATCAAGATGGGTATCGTGTAGCAGAGGTTGACTGGATACAGGATATCATGCCTCCAGAAGGCAGTTTAGAGAAACAGTATTTCCAGGAATTGACGTATGATGCAGCTGAAACTGCTAGATCATGGATAAGAAGAGCTAAAGAAGCAGCAAGAGCAAAACAAGATCAAAGAAGACTTGAGAGAATCCTGTCCGTTGAATTGATGATGCCCAGTCTAAAAGATCCAGAGCTCTTCAGTTTTTGGCTTGCTTCCTTGTCAAAGCTGAGGCCTCTAGAAAGATTAGATCTTATGGGCTTAAGAGACACTAGAGAGAGGATTAAACGTGGACTGAATTATCTGCGAGCAGAGGAGCAACGCTGCAGAATTCAATGA 1500 0.426 MAEESPSSSSVVLTMDGLDDVENYVWAHEQGGLAWDTYHHIFELVQNGNMSFRENRLEEAINFYSRANSIKPGDPVILSNRCAAYLRISKLLKDRSPSTSEYKPLSGLDPTIHAELCLKDAGKLVDLQSNSVRSYLLKANALFLLEKYEKARDAILSGLQVDPLSDSLRASLKSLDAVSASLMGMSRHGQPGTSTHRQPERNDDFDCTVCLKLLYEPVTTPCGHSFCHLCLFQSMDHGNRCPLCRTVLFFSPRTCSISVTLKNIIQKTFPEEYAKRKQEHESLTNFGADLIPLFVMDVVMPCQKFPLNIFEPRYRLMVRRVMEGNHRMGMAIIDSTTGSLAEYACEVEITECEPLPDGRFYIEIESRRRFRIIRSRDQDGYRVAEVDWIQDIMPPEGSLEKQYFQELTYDAAETARSWIRRAKEAARAKQDQRRLERILSVELMMPSLKDPELFSFWLASLSKLRPLERLDLMGLRDTRERIKRGLNYLRAEEQRCRIQ 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0601 499 ProSiteProfiles Zinc finger RING-type profile. 207 245 IPR001841 -
Lele18g0601 499 SMART ring_2 207 244 IPR001841 -
Lele18g0601 499 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 287 IPR013083 -
Lele18g0601 499 PANTHER RING FINGER PROTEIN 127 32 491 - -
Lele18g0601 499 SUPERFAMILY TPR-like 42 167 IPR011990 GO:0005515
Lele18g0601 499 SMART tpr_5 41 74 IPR019734 GO:0005515
Lele18g0601 499 SMART tpr_5 132 165 IPR019734 GO:0005515
Lele18g0601 499 SMART lon_5 290 491 IPR003111 -
Lele18g0601 499 SUPERFAMILY RING/U-box 202 270 - -
Lele18g0601 499 ProSiteProfiles TPR repeat profile. 41 74 IPR019734 GO:0005515
Lele18g0601 499 Gene3D - 290 391 IPR046336 -
Lele18g0601 499 SUPERFAMILY PUA domain-like 291 489 IPR015947 -
Lele18g0601 499 ProSiteProfiles Lon N-terminal domain profile. 288 491 IPR003111 -
Lele18g0601 499 Pfam ATP-dependent protease La (LON) substrate-binding domain 291 489 IPR003111 -
Lele18g0601 499 ProSitePatterns Zinc finger RING-type signature. 222 231 IPR017907 -
Lele18g0601 499 Gene3D Tetratricopeptide repeat domain 40 177 IPR011990 GO:0005515
Lele18g0601 499 Pfam Zinc finger, C3HC4 type (RING finger) 207 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0601 Lele-ChrLele18 3587738 3592606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0601 193 248 C3H Transcription Factor Family AT1G74990 35.593 1.05e-09 55.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele18g0601 18 3587738 3592606 Lele19g0633 19 3638784 3644120 hybridization
Lele18g0601 18 3587738 3592606 Lele20g0819 20 14909457 14914286 hybridization