Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0587 ATGATCGTAATCGTGACAGAGACAGCCGGGGCAACCAATAAGCTTGCGAAAGACGATGTTGCCAGGGAAGTCCCTGCGCCAACGGGCGGGGTCTCGTCCTTTGATCTTCTCGGCCTTGTCCCAACATTGCTGTTTGACACTGTAAGGGAAGCTCCGAGGGTTAGCGTTAGAATTAGCGTAGTAGTCCTGAGATCGTTGATCTTCAAAGAGAGAGGTGGGCTCCCTCGTCTTCTAGCTCTGCTTTCGGTGCGGTTTTCTTTGAGGTGTTTGACATTTTCATTTGCGGTGCTGACATGGGAAAGATCTATATATCGTCTTCAGAATCTTGATAAGGTTAAGTTTCTTCAATGTTCTGGGATGGGAAGAGTTAAATTAAAGATAAAGAAATTAGACAGCATTAGTAATAGACAAGTGACTTTTTCAAAGCGAAAGAGTGGAATATTGAAGAAAGCTAAGGAATTATCAATATTATGTGATATAGACATTGCCCTTCTCATGTTTTCTCCAACAGGGAAGCCTATATTACTGCAAGGAGAACGCAGTAATCTCAAGGAGGTCATTGAAAAATTTGCTCAACTAAGCCCACAAGAAAGGGCCAAAAGGAAATTGGAAAGCCTTGAAGCACTAAAGAAAACCTTCAAGAAGTTGGATCATGATGTAAAAATACAAGATTTCTTGGGTTCAAGCAGTCAACAAGTCGAGGAATTGACTCATCACGCGAGAATGCTACAAGCTCAGATTGCTGAAGCGCACCAGAGACTGAGCTATTGGAATAATGTAGATAAGATCAATAACGTTGAACATCTTAGGCAAATGGAAGACTCACTAAAGGAATCAATCAACCGATTACGTCTACACAAGGAAAACATGGGAAAACACCAACTAATGACACTTGAATGCGCTACCCAGTTACAGGAAGGGATGACTTTACCCATGATGATGGCTGGTTTGCAAGAATCTCAACCTCTTTCTTGGCTATTGAATAATGATAATAATCAATTGATTTTACCAAGTGAACCAAAATTTCTACCATTTAGTGATAATCCCAATAGAGATGCTGAGTGCTCCATGAACGTTTCACTACCAGGCAGCTTGTCTGGTTATATGAGCGCCGCCAAACTTGAGGTTGGCAACTCACCTCAGGTTGGTACTTTTGGTCAGGGTGGTGGTCCCTTGAATGAGTTTAATGAAGGTGCTTGCTTAGGTGCGCAACCTTGCGAGCAGTTTTCATATCCTCCACCACTGGAAAATGAGGAACAGAAGCATCATCAGGTTATGAAAGGTAGACCGAGCCCCGTGGATTATCAAGTTAATAGCAGCTTTGATCTGCCTAGATCCATCTTTGAAAATGGACATCAATTCTGGAATTCTACCTCTGCACCTTGCAGCATTGCCATGTACAATGAGAATGGCTACCATCAGGCAAGCAATCCTTTTGTCATCTGA 1446 0.4253 MIVIVTETAGATNKLAKDDVAREVPAPTGGVSSFDLLGLVPTLLFDTVREAPRVSVRISVVVLRSLIFKERGGLPRLLALLSVRFSLRCLTFSFAVLTWERSIYRLQNLDKVKFLQCSGMGRVKLKIKKLDSISNRQVTFSKRKSGILKKAKELSILCDIDIALLMFSPTGKPILLQGERSNLKEVIEKFAQLSPQERAKRKLESLEALKKTFKKLDHDVKIQDFLGSSSQQVEELTHHARMLQAQIAEAHQRLSYWNNVDKINNVEHLRQMEDSLKESINRLRLHKENMGKHQLMTLECATQLQEGMTLPMMMAGLQESQPLSWLLNNDNNQLILPSEPKFLPFSDNPNRDAECSMNVSLPGSLSGYMSAAKLEVGNSPQVGTFGQGGGPLNEFNEGACLGAQPCEQFSYPPPLENEEQKHHQVMKGRPSPVDYQVNSSFDLPRSIFENGHQFWNSTSAPCSIAMYNENGYHQASNPFVI 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0587 481 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 132 173 IPR002100 GO:0003677|GO:0046983
Lele18g0587 481 Coils Coil 269 289 - -
Lele18g0587 481 Coils Coil 233 253 - -
Lele18g0587 481 SUPERFAMILY SRF-like 121 214 IPR036879 GO:0003677|GO:0046983
Lele18g0587 481 Coils Coil 196 216 - -
Lele18g0587 481 ProSiteProfiles MADS-box domain profile. 120 172 IPR002100 GO:0003677|GO:0046983
Lele18g0587 481 PANTHER SERUM RESPONSE FACTOR HOMOLOG 122 324 - -
Lele18g0587 481 FunFam Agamous-like MADS-box protein AGL30 133 215 - -
Lele18g0587 481 Gene3D - 133 216 IPR036879 GO:0003677|GO:0046983
Lele18g0587 481 PRINTS MADS domain signature 122 142 IPR002100 GO:0003677|GO:0046983
Lele18g0587 481 PRINTS MADS domain signature 157 178 IPR002100 GO:0003677|GO:0046983
Lele18g0587 481 PRINTS MADS domain signature 142 157 IPR002100 GO:0003677|GO:0046983
Lele18g0587 481 SMART madsneu2 120 179 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0587 Lele-ChrLele18 3520193 3525730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0587 120 424 Type I MADS-box Gene Family AT2G03060 47.516 1.56e-86 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele18g0587 SRF-TF 2e-20 No_clan