Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0578 ATGCCCACCGCTCATAACAACAGACCCACCACACACTCCCTTCTTACAGATTCAACTTTAATCTTCCTGTCGTATGCGATCATGGAGGGTGGTGATGATCTCCACCACCACCACCACCAACACCACCGTCCTAACTTCCCATTTCAGCTTCTCGAGAAGAAAGAAGATCATCACCAAGAGCCTGCTCCTTGTTCCACTTCTTCCTCTTACCCTTCTTTAGCCATCTCCGCCGAGCCCACCACCTCCAATTCCAACCGATCCAACCAGGTTCTTAACGTCGTCCCCCCCACCTCTTCCTCCTCCGAACCTTCCAATAAGAAGCCCCCACCCAAGAGAACTTCCACCAAGGACCGACACACCAAGGTCGACGGTCGCGGCCGCCGTATCCGAATGCCCGCGCTTTGTGCGGCTCGCGTCTTCCAGCTCACCCGCGAGCTCGGCCATAAGTCCGATGGCGAAACCATCGAGTGGCTGCTCCAACAGGCTGAGCCCTCCGTCATCGCTGCCACCGGCACTGGAACGATCCCCGCTAATTTCACTTCCCTTAATATTTCTCTGAGAAGCTCCGGCTCCACCATGTCCGTCCCTTCTCAGCTCAGATCGTCTTACTTCAATCCCAACTTCTCGGTTCAGCAGCGGAGAAGCTTCTTCCCGGGAATTGGCTTGTCTTCCGATGGCAACAACACTTCAACGCTGCTGAATTTTCAGTCTAATAGTTTCTCCGGCTGTAGCATGTTGCAAGCAAAGCAGGAATTGCACGGAGGCGAGGGAGGTGTTCCGTCCTCCTCGCCAACGTTGGATTTGACGGGGGCGGAAGAAGGTATGGCGAGGAAAAGGCGACCGACGGAGCAAGAGTTGTCGCCGTCTACTTCAGTACAACAATATCAAATGGGAAGTTATTTGTTGCAATCGAGCACGGGGGCTAGTACGACGAGCCACGCACAGATTCCGGCGAATATATGGATGATGACGAATTCTAATAATCAAGTTATGAGCGGGGATCCTATATGGACATTCCCGTCGGTGAACAACAGTGCTTTGTACAGAGGCGCCACCATGTCCAGTGGGTTGCATTTTATGAACTTCCCTACTCCTATGGCGTTGTTGCCTGGTCAACAATTAGGGTCGTCTGGGATTGGTGGCGGTGGAGCTGGGAACATAAACGAGGGACATTTGAGTATGCTAGCCGGCGTCAACCCATACCGGCCGGTGAGTGGAGTTTCGGAGTCTCAGGCAAGTGGATCTCAATCACATCATGGTGGTGGAGGAGGCGACGATCGACACGATACAAACAGTCACCACTCCTAG 1308 0.5344 MPTAHNNRPTTHSLLTDSTLIFLSYAIMEGGDDLHHHHHQHHRPNFPFQLLEKKEDHHQEPAPCSTSSSYPSLAISAEPTTSNSNRSNQVLNVVPPTSSSSEPSNKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTSLNISLRSSGSTMSVPSQLRSSYFNPNFSVQQRRSFFPGIGLSSDGNNTSTLLNFQSNSFSGCSMLQAKQELHGGEGGVPSSSPTLDLTGAEEGMARKRRPTEQELSPSTSVQQYQMGSYLLQSSTGASTTSHAQIPANIWMMTNSNNQVMSGDPIWTFPSVNNSALYRGATMSSGLHFMNFPTPMALLPGQQLGSSGIGGGGAGNINEGHLSMLAGVNPYRPVSGVSESQASGSQSHHGGGGGDDRHDTNSHHS 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0578 435 MobiDBLite consensus disorder prediction 62 108 - -
Lele18g0578 435 MobiDBLite consensus disorder prediction 404 418 - -
Lele18g0578 435 MobiDBLite consensus disorder prediction 421 435 - -
Lele18g0578 435 Pfam TCP family transcription factor 113 225 IPR017887 -
Lele18g0578 435 MobiDBLite consensus disorder prediction 55 127 - -
Lele18g0578 435 MobiDBLite consensus disorder prediction 109 127 - -
Lele18g0578 435 MobiDBLite consensus disorder prediction 402 435 - -
Lele18g0578 435 ProSiteProfiles TCP domain profile. 115 169 IPR017887 -
Lele18g0578 435 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 56 425 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0578 Lele-ChrLele18 3418187 3419494 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0578 106 429 TCP Transcription Factor Family AT3G47620 44.310 5.30e-63 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lele18g0578 TCP 1.8e-37 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele18g0578 18 3418187 3419494 Lele20g0840 20 15080256 15081509 hybridization