Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0571 ATGGTGCTTGAGAGTAAAATGCAAACAATTCAGCAAAATGCTTATCATTACAAGACAATTACTGTGAATAATGCTACAAAAGTTCCTAGTACAAACAACAAAGATAAATCTAAGACTCTCTGTGCCCCAAGATCTGAAGGCGATATACTTTGCTCACCAAATTTGAAGGCCTTCACATTAAATGAACTTAAGAGTGCCACTAAAAACTTTGTTCCTGATAGTCTAATAGGGCAAGGGGGCTTTGGTCATGTCCACAAAGGGTGGATTGATGAGCAATCCCTTAGTGCTACTAAGCCTGGATCTGGAATGGTTGTGGCCGTGAAGAAGTTGAAACCTGAAGGTTTTCAAGGGCATAAGGAGTGGCTGTGTGAAGTCAATTATCTTGGCCAACTTCATCATCCAAATCTTGTCAAACTTATTGGATACTGCCTCGATGGAGACAACCGGCTTCTAGTATATGAGTACATGTCCAAAGGCAGCTTGGAGAACCATCTATTCCGCATTGGGTCACCATCTATGGAACTTTTGCTTGCAGAGGGATCACATTCACTTTCTTGGGCAACAAGGATCAAAGTTGCCATGGACGCAGCTCGTGGTCTCGCCTTTCTGCATGACTCCAATCCACAAGTTATCTACCGTGATTTTAAGGCTTCAAATGTATTGTTAGATTCGGAATTTAATGCAAAACTCTCAGACTTTGGGTTGGCTAAAGCAGGACCAACCGGTGATCGTACTCATGTTTCAACTCAAGTCATGGGTACTCACGGCTACGCTGCTCCTGAATATACTGCTACAGGGAGCTCACCTTTGGGAAATGTTCATTGTTTAACAGAGAGCAAGTCTGTATCTAGTCATCCAAGATTATACATCATCGTATATCAATTAGGACTAGGTTTCAGTTTCTGCATTGCTGTAACGAGAGCCAGTCGTAATTGTTCAATGACAAGAAATTCAGTTTCAGTTTCTGGTATGGCAAGACCAGGAAAATCAATTTCAAGTCGAAGCATTCCCGCTCGAATTACTCAACTCCAATATTACGAAAGCTTATTCTTCCTATTGGAACGATGCAAAGGGAAGCGGCAACTCAATCAAATTCATGCACTTTCGATCATTTCAGGTCTCATTCGAAAGCCCTCTTTAGCAAGCAAACTTGTTGCGTCTTTTGCCTTGAGCCCCCTGCCTGGCACTACCTCTGTAGCCCATGCAATCGCTGATCGTATTCAAGGTCTTGATACTTACACTTGGAACACAATCGCCAGAGGTTATTTGGAGGCAAATAAACCCGAAGAAGCCTTTTCAGTTTATTCCCTCTTAAGAAGAAGAGCCTTGAGGGTTGATAGTTACACCCTTCTATTTGCAATCAAAGCGTGCGAGATTAACATAATTCAAGGAGAACAGTTGCACGTTCAAGTGTACAAACTGGGATTTTCGCATGAGCTTATAATCCGAACTGCAGTTATGCAAATGTATGCGTCGTATGGTAGGATTTCTCACGCGGAACAAGTGTTCGATGAAATGCCCCAAAGAGATTTGGTTATGTGGAATTCCCTTATTGCTTTATATGCTCAAAAGGGTTTCCCTTTGAAAGCACTTCAAGGTTTGCATAGTATGGTCACGAATAATATTCGGTCTAATGAGGTGACGGCAGCAAGTGTTCTTTCTTCTTGCTCTTCAATGAAAGCACTGAAAGAGGGCAGAGTAGTCCATGGTTATGTGATCAGAAATCTCTGCCATTTTGATATTTTTCTCAACAATGCCTTGATTGGAATGTATTCAAATTGTGGGGATCTTTCAAAAGCGCTCCTCATCTTTCAATTGATGCCTTCAAGAAATGTGGTTTCGTGGACATCAATGGTCAAGGGTTATGTTGATAACAACTGTCCACATGATGCGCTGAATCTGTTCTCCAAGATGGAATCTGAAAACATAAGACCAGACGAGGTTACCGTGTTAGAGTTAATTTCAATGTGCTCCAAATTGGGACGCTTTGAACTTGGACTACAGATTGAAGACTATCTAGAGAAGAACACGATTAGTAAAGAGAATCACTCTATTGCAAATGCTTTAATGGACATGCATGCCAAATGTGGTAATATGAAGAAGGCCTGCCAAATTTTTGATGGGATAGTGCAGAAAACTCTAGTATCCTGGACTACAATCATTAATGGGTTAGCAAGGCATGGCCATGGCATGCCGGCATTAGTCCGATTCTGTCAGATGCAAAGGGAAGGTTTTAGACTAGATGGTGTTATCTTCCTCAGCATATTATCTGCTTGTAGCCATGCAGGTTTAGTAGATGAGGGATTGAAATGTTTCGAATCAATGATTAATGATTATCATATAGAGCCATGGATGGAGCACTACGGAAGTATTGTGGATCTTCTATGCAGGGCGGGACTAGTGAAAGAGGCATTAGACTTTGCTGAGGCAATGCCATTAAAACCAGATACTGTGGTGTGGCGAATGCTGCTTGGAGCATGTCAAAGGCAAAGTAGCACGGAGCTAACAAATCGTGTTGCAAAGATTTTACACGAAGCTGGCCCTAAAAGTATTGAAGATTATGTACTGCTGTCTAATTCTCACGCAGCCATGGAAGGATGGAGTGATGTACAAGAACTAAGGGGAGAAATGAAGATTATGGGTTTAAGGAAGCAAAACTCGGGCAGTAGTTTGGTAGAGGTAGGTCATGCTTTGTAA 2697 0.4182 MVLESKMQTIQQNAYHYKTITVNNATKVPSTNNKDKSKTLCAPRSEGDILCSPNLKAFTLNELKSATKNFVPDSLIGQGGFGHVHKGWIDEQSLSATKPGSGMVVAVKKLKPEGFQGHKEWLCEVNYLGQLHHPNLVKLIGYCLDGDNRLLVYEYMSKGSLENHLFRIGSPSMELLLAEGSHSLSWATRIKVAMDAARGLAFLHDSNPQVIYRDFKASNVLLDSEFNAKLSDFGLAKAGPTGDRTHVSTQVMGTHGYAAPEYTATGSSPLGNVHCLTESKSVSSHPRLYIIVYQLGLGFSFCIAVTRASRNCSMTRNSVSVSGMARPGKSISSRSIPARITQLQYYESLFFLLERCKGKRQLNQIHALSIISGLIRKPSLASKLVASFALSPLPGTTSVAHAIADRIQGLDTYTWNTIARGYLEANKPEEAFSVYSLLRRRALRVDSYTLLFAIKACEINIIQGEQLHVQVYKLGFSHELIIRTAVMQMYASYGRISHAEQVFDEMPQRDLVMWNSLIALYAQKGFPLKALQGLHSMVTNNIRSNEVTAASVLSSCSSMKALKEGRVVHGYVIRNLCHFDIFLNNALIGMYSNCGDLSKALLIFQLMPSRNVVSWTSMVKGYVDNNCPHDALNLFSKMESENIRPDEVTVLELISMCSKLGRFELGLQIEDYLEKNTISKENHSIANALMDMHAKCGNMKKACQIFDGIVQKTLVSWTTIINGLARHGHGMPALVRFCQMQREGFRLDGVIFLSILSACSHAGLVDEGLKCFESMINDYHIEPWMEHYGSIVDLLCRAGLVKEALDFAEAMPLKPDTVVWRMLLGACQRQSSTELTNRVAKILHEAGPKSIEDYVLLSNSHAAMEGWSDVQELRGEMKIMGLRKQNSGSSLVEVGHAL 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0571 898 ProSiteProfiles Protein kinase domain profile. 70 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele18g0571 898 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 348 896 - -
Lele18g0571 898 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 510 544 IPR002885 -
Lele18g0571 898 Gene3D Phosphorylase Kinase; domain 1 42 155 - -
Lele18g0571 898 ProSitePatterns Protein kinases ATP-binding region signature. 76 109 IPR017441 GO:0005524
Lele18g0571 898 Gene3D Tetratricopeptide repeat domain 342 465 IPR011990 GO:0005515
Lele18g0571 898 Gene3D Tetratricopeptide repeat domain 466 568 IPR011990 GO:0005515
Lele18g0571 898 Gene3D Tetratricopeptide repeat domain 569 664 IPR011990 GO:0005515
Lele18g0571 898 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 611 645 IPR002885 -
Lele18g0571 898 FunFam Serine/threonine-protein kinase BIK1 37 155 - -
Lele18g0571 898 Gene3D Transferase(Phosphotransferase) domain 1 156 278 - -
Lele18g0571 898 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 411 445 IPR002885 -
Lele18g0571 898 Pfam PPR repeat 787 811 IPR002885 -
Lele18g0571 898 Pfam PPR repeat 512 542 IPR002885 -
Lele18g0571 898 Pfam PPR repeat 750 777 IPR002885 -
Lele18g0571 898 Pfam PPR repeat 413 441 IPR002885 -
Lele18g0571 898 Pfam PPR repeat 687 710 IPR002885 -
Lele18g0571 898 Pfam PPR repeat 484 510 IPR002885 -
Lele18g0571 898 Pfam PPR repeat 715 745 IPR002885 -
Lele18g0571 898 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 684 898 - -
Lele18g0571 898 FunFam Pentatricopeptide repeat-containing protein chloroplastic 565 664 - -
Lele18g0571 898 FunFam Pentatricopeptide repeat-containing protein 425 564 - -
Lele18g0571 898 Pfam Protein tyrosine and serine/threonine kinase 75 264 IPR001245 GO:0004672|GO:0006468
Lele18g0571 898 Gene3D Tetratricopeptide repeat domain 682 896 IPR011990 GO:0005515
Lele18g0571 898 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 713 747 IPR002885 -
Lele18g0571 898 SUPERFAMILY Protein kinase-like (PK-like) 47 265 IPR011009 -
Lele18g0571 898 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Lele18g0571 898 Pfam E motif 832 892 IPR046848 -
Lele18g0571 898 TIGRFAM PPR: pentatricopeptide repeat domain 751 778 IPR002885 -
Lele18g0571 898 TIGRFAM PPR: pentatricopeptide repeat domain 613 647 IPR002885 -
Lele18g0571 898 TIGRFAM PPR: pentatricopeptide repeat domain 715 748 IPR002885 -
Lele18g0571 898 TIGRFAM PPR: pentatricopeptide repeat domain 413 442 IPR002885 -
Lele18g0571 898 TIGRFAM PPR: pentatricopeptide repeat domain 484 512 IPR002885 -
Lele18g0571 898 Pfam PPR repeat family 610 657 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0571 Lele-ChrLele18 3373544 3378744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0571 400 898 Glycoside Hydrolase AT3G49170 30.830 4.09e-75 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lele18g0571 PK_Tyr_Ser-Thr 7.9e-32 CL0016