LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele18g0566	ATGGAGTTTGCTCTGCGCAGATCTGGCCAACAAGAAGGTGAACCAGTCAAGGAAGAGAAGAGAACTGAATCTGCTGCTGCTCATAATCATGAAGCTCCTTCTCATCTTAAAGAAGATACTGCTCTTGTCGAGGCTGATGAACTTGAATCAGCAAGAGTTGAAATGGTTGAGGTGAGAGAAGAAAACCAAAGGCTAAAGATGTGTTTGGACCGAATCATGAAGGAATACCAGGCTCTGCAAATTCAATTCCACGTTATGGCTCAGCAAGAAGAAGCCACCACTAAATCTTCTCATCAAAACAATCAAGAGCCACCACCTGAGGAATCCGATCTGGTCTCACTCAGTCTTGGTCCAAAATCTGACGAAAAACCTAATAAAGTCATCAGCTCCAAACCACCATCATTACATTTACAGCGACAAGAAGAAGAATTGAAACAAGACTTGGCTCTTGGACTGGATTGCAAATTTGAAACATCAAAATCTGGAAGCACCCCTGAAGCTTTGCCCAACAATAATGCAAGCTCACCAAATAGCTCTGAATTAGTTCACAAGGAAGAAGCTGGCGAGAGTTGGCCACCAAGTAAAGCACTTAATAATAACAAAACTCCCCGAGATTCCACAGATCAAGGTGAAGTTTCCCAGCAAAATCCTGCAAAGAAGGCCAGAGTTTGTGTTAAAGCAAGATGTGACACCCCAACTATGAATGATGGATGCCAATGGAGGAAATATGGACAAAAAATATCCAAGGGAAATCCTTGTCCTAGAGCTTACTATCGTTGCACAGTTGCACCAAATTGTCCGGTAAGAAAGCAGGTGCAAAGATGTGCAGAGGACATGTCGGTTCTGATCACTACCTATGAAGGAAACCACAACCACCCTCTTCCTCTCTCTGCCACTGCTATGGCTTCCGCCACTTCTGCAGCTGCTTCCGTGCTCTTGTCTGGTTCATCTTCAACCTCTAATCTCCCCGGTTCAGTGCCGTCTTCATCAGCAGCCACCGATGCGGCCACCACCATTGGCTCTGATCTTCACGGCATCAACTTTTACCTCTCAGATGGCTCAAAACCAAGGCAATTCTACGTCTCCAATCCTGCACTATCACCCTCACCATCACACCCAACAATTACCCTCGACCTCACTTCCAATCCTTCCTCTTCAAATTATTTGTTGTCCCACTTCAATAGATTTAACTCAAACTACAATAACAACCCACCCAGATTCCCTTCTTCTACCAGTACCCTCAGCTTCAGTTCCTCAGAATCCAATGCAATGTCGTGGAGCAAAAATGTGGGGTTCCTGGGTTACAACTACAACCCGACTCAACCATGTAATAACAACAGGAACATCCTTGGCAGCATCAACCTCGGAAGACAACTACCGATTCCAACTGCCCCTCCTCCTCCTCCTCAAGTACATCAAAATCCTTCACTGCCAGACACCATAGCTGCAGCAACTAAAGTGATCACAGCTGACCCATCTTTTCAGTCAGCTTTGGTTGCGGCACTTACTTCCATTATCGGCACAGGAAATAGTAGTGGTAGTGTTAGTGGGAATAGTACACAAGGTGTTGGAGAAATCAACTTGGGTCAGAAAATTAACCTAAGGGGAGATATTTTTGCATCTGGGTCAGCTTCCAAAGTCACCGGACTTGGTTCAAGCTTCTTGAGTAGTAAAACGACGCCGGCCGGAACACAAGCTGCAGCAAGTAGTGGTTTGATGTTTCTACCTCCATCTTTGCCATTTTCTAGCTCCAAGACGGCATCTGCGTTATCTCCTGCTGATAATAGAGACAAGTCCAACGTGACGTGA	1809	0.4544	MEFALRRSGQQEGEPVKEEKRTESAAAHNHEAPSHLKEDTALVEADELESARVEMVEVREENQRLKMCLDRIMKEYQALQIQFHVMAQQEEATTKSSHQNNQEPPPEESDLVSLSLGPKSDEKPNKVISSKPPSLHLQRQEEELKQDLALGLDCKFETSKSGSTPEALPNNNASSPNSSELVHKEEAGESWPPSKALNNNKTPRDSTDQGEVSQQNPAKKARVCVKARCDTPTMNDGCQWRKYGQKISKGNPCPRAYYRCTVAPNCPVRKQVQRCAEDMSVLITTYEGNHNHPLPLSATAMASATSAAASVLLSGSSSTSNLPGSVPSSSAATDAATTIGSDLHGINFYLSDGSKPRQFYVSNPALSPSPSHPTITLDLTSNPSSSNYLLSHFNRFNSNYNNNPPRFPSSTSTLSFSSSESNAMSWSKNVGFLGYNYNPTQPCNNNRNILGSINLGRQLPIPTAPPPPPQVHQNPSLPDTIAAATKVITADPSFQSALVAALTSIIGTGNSSGSVSGNSTQGVGEINLGQKINLRGDIFASGSASKVTGLGSSFLSSKTTPAGTQAAASSGLMFLPPSLPFSSSKTASALSPADNRDKSNVT	602

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele18g0566	602	MobiDBLite	consensus disorder prediction	1	45	-	-
	Lele18g0566	602	MobiDBLite	consensus disorder prediction	89	108	-	-
	Lele18g0566	602	MobiDBLite	consensus disorder prediction	157	181	-	-
	Lele18g0566	602	MobiDBLite	consensus disorder prediction	89	138	-	-
	Lele18g0566	602	ProSiteProfiles	WRKY domain profile.	229	295	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele18g0566	602	SUPERFAMILY	WRKY DNA-binding domain	228	295	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lele18g0566	602	MobiDBLite	consensus disorder prediction	11	45	-	-
	Lele18g0566	602	Gene3D	WRKY domain	217	296	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lele18g0566	602	Pfam	WRKY DNA -binding domain	235	293	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele18g0566	602	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	34	519	IPR044810	GO:0003700
	Lele18g0566	602	FunFam	probable WRKY transcription factor 31	219	296	-	-
	Lele18g0566	602	MobiDBLite	consensus disorder prediction	193	216	-	-
	Lele18g0566	602	MobiDBLite	consensus disorder prediction	582	602	-	-
	Lele18g0566	602	MobiDBLite	consensus disorder prediction	156	223	-	-
	Lele18g0566	602	Coils	Coil	48	75	-	-
	Lele18g0566	602	SMART	WRKY_cls	234	294	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele18g0566	Lele-ChrLele18	3345424	3349145	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele18g0566	55	508	WRKY Transcription Factor Family	AT5G15130	40.421	2.33e-86	276

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Lele18g0566		WRKY	5.7e-24	CL0274

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele18g0566	18	3345424	3349145	Lele19g0593	19	3411781	3414879	hybridization
	Lele18g0566	18	3345424	3349145	Lele20g0854	20	15152925	15156673	hybridization