Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0556 ATGCATTATCACTCCCTAGCCTTTACAGGGAAAAGAAAGAAAGAAGCAAAAAGCTGTGACTCCTATGGACTGCCGTTACTGATTACCACTCCATCCAGAATACAGAGCCCCTCCTTGGGTTGGTTGCATAGCACAGCGGTTTCTGTTACCTCTGATTTCTCATTCTCCCTCTCTCTTTTTTACATTTTATCCGCTGTTCTCTTCTTTCTACCTCCTCTCGCCGCTTGCTATATTTCTGAACGCTTTCGTCGTCGTCAGAGGAAGTTGGATAAGAAGAGTGAGTTAGCGGTACTGGGAGAAGAAGAAGTGGAGGAGGAGATGGAGGACAAGTCCCAAGTATTGGAGGCTGTGTTGAAGGAAGCTGTGGATTTGGAAAACATACCCATTGAGGAGGTTTTTGAGAATCTAAGATGTAGCAGAGAAGGTCTCACCTCTGTGGCTGCTGAAGAGAGGCTCACCATTTTCGGGCATAACAAGCTTGAAGAGAAAAAGGAGAGCAAATTTTTGAAGTTCTTGGGCTTTATGTGGAATCCTCTGTCTTGGGTTATGGAGGCTGCTGCTATAATGGCAATTGCGCTTGCAAATGGAGGGGGGAAGCCTCCTGACTGGCAAGACTTTGTGGGGATAATCACTCTGCTTCTCATCAATTCAACTATTAGTTTCATCGAGGAAAACAATGCTGGTAATGCTGCAGCCGCTCTCATGGCTAGTCTTGCTCCAAAAGCAAAGGTTCTTCGAGATGGTAGTTGGAGTGAGCAAGATGCCGCAGTCCTGGTTCCAGGTGATATCATCAGTGTTAAACTGGGAGATATCATACCAGCTGATGCTCGTCTTCTTGAAGGGGATCCTCTGAAAATCGATCAGTCTGCACTTACAGGTGAGTCCCTGCCAGTGACAAAAGGTCCTGGTGATGGTGTGTACTCTGGTTCTACCTGCAAACAAGGAGAGATTGAGGCTGTGGTCATTGCCACTGGTGTGCATACCTTCTTTGGGAAAGCTGCTCACCTTGTAGATACCACTAATCAAGTTGGTCACTTCCAAAAGGTCTTGACTGCTATTGGGAACTTCTGCATATGTTCAATTGCTCTGGGGATGCTTATTGAGATTATTGTTATGTATCCTATCCAAGACCGACAATACCGTCCTGGAATTGATAACCTTCTTGTACTTCTGATTGGAGGAATTCCAATTGCCATGCCTACAGTTCTTTCAGTGACCATGGCTATTGGTTCTCACAGGTTATCTCAGCAGGGAGCTATCACTAAGAGGATGACAGCCATTGAAGAGATGGCAGGCATGGATGTGCTTTGCAGTGATAAAACTGGGACTCTAACATTAAACAAGCTAACTGTTGACAAAAATCTTATTGAGGTTTTTGCAAAAGGAGTGGATCCGGATACTGTTGTTTTGATGGCAGCTCGAGCCTCGAGACTTGAGAATCAAGATGCAATAGATTCTGCCATAGTTGGGATGCTGGCTGATCCAAAAGAGGCACGAGTGGGAATCCAAGAAGTACATTTTCTTCCTTTCAATCCCACTGATAAGAGAACAGCATTAACTTACATTGATGGTGAAGGTAAAATGCATAGGGTAAGCAAAGGTGCACCAGAGCAGATTCTCAATCTTGCACACAATAAGTCAGATATCGAACGCAGAGTCCATGCAATAATAGACAGGTTTGCAGAGCGTGGTCTACGATCTCTTGCTGTAGCATACCAGGAAGTTCCAGAAGGAAGGAAGGAGAGTGCTGGAGGCCCATGGCAGTTCATTGGTCTTATGCCTCTCTTTGATCCACCAAGGCATGACAGTGCAGAAACAATACGGAGGGCTCTAAACCTTGGAGTAAATGTCAAAATGATAACAGGTGATCAACTAGCTATAGGGAAGGAAACCGGCCGTCGTTTGGGAATGGGGACCAACATGTATCCCTCATCTGCATTGCTTGGGCAGGACAAGGATGAATCCATTTCTGCACTACCTATTGATGAATTGATAGAAAAAGCTGATGGATTTGCTGGTGTTTTTCCTGAACACAAGTATGAGATTGTGAAACGCTTGCAAGCGAGGAAACATATATGTGGAATGACTGGTGATGGAGTAAATGACGCACCTGCTCTTAAAAAGGCTGACATTGGTATCGCTGTTGCCGATGCAACTGATGCTGCTCGTAGTGCATCTGATATTGTTTTAACAGAACCTGGTCTTAGTGTTATCATTAGTGCTGTTTTGACAAGCCGGGCCATCTTCCAGAGAATGAAAAATTATACAATTTATGCAGTCTCAATTACAATCCGTATTGTGCTTGGTTTCATGTTGCTGGCCCTCATATGGAAGTTTGACTTTCCTCCTTTTATGGTGCTAATCATTGCCATCCTAAATGATGGTACTATCATGACAATCTCAAAAGATAGAGTAAAACCCTCTCCTCTGCCTGATAGCTGGAAGCTCGCCGAGATATTTACCACCGGCATTGTACTCGGAAGTTACTTGGCAATGATGACAGTGATATTCTTTTGGGCAGCATACAAAACAGATTTCTTCCCACGAGTATTTGGGGTCTCAACTCTTGAAAAAACTGCTCATGATGATTTCCGGAAGCTCGCCTCTGCGATATATCTTCAAGTGAGCACTATCAGTCAGGCCCTTATATTCGTGACTCGGTCTCGAGGCTGGTCATATGTTGAGCGTCCTGGTATACTGTTAATGACTGCTTTTGTGGTTGCTCAGCTGATTGCCACTTTGATTGCCGTATATGCTAACTGGAGCTTTGCTGCAATTGAAGGAATTGGTTGGGGTTGGGCAGGAGTAATATGGTTATACAACATCATATTTTACATCCCACTTGATTTCATCAAGTTCTTCATTCGTTATGCTTTGAGTGGCAGGGCTTGGGATCTTGTCATTGAGCAAAGGATTGCATTTACAAGGCAAAAGGACTTTGGGAAGGAACAAAGGGAACTTCAATGGGCACATGCTCAGAGAACCTTACATGGATTACAAGTACCTGACACCAAGTTCTCCGATCGCACTCATTTCAATGAACTCAATCAAATGGCTGAAGAAGCTAAAAGGAGAGCTGAAATCGCAAGGTTAAGAGAATTGCATACACTAAAAGGTCATGTAGAATCAGTTGTGAGATTGAAGGGGCTTGACATTGACACAATTCAGCAAGCTTACACAGTATAA 3186 0.441 MHYHSLAFTGKRKKEAKSCDSYGLPLLITTPSRIQSPSLGWLHSTAVSVTSDFSFSLSLFYILSAVLFFLPPLAACYISERFRRRQRKLDKKSELAVLGEEEVEEEMEDKSQVLEAVLKEAVDLENIPIEEVFENLRCSREGLTSVAAEERLTIFGHNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLLINSTISFIEENNAGNAAAALMASLAPKAKVLRDGSWSEQDAAVLVPGDIISVKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQVGHFQKVLTAIGNFCICSIALGMLIEIIVMYPIQDRQYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFAKGVDPDTVVLMAARASRLENQDAIDSAIVGMLADPKEARVGIQEVHFLPFNPTDKRTALTYIDGEGKMHRVSKGAPEQILNLAHNKSDIERRVHAIIDRFAERGLRSLAVAYQEVPEGRKESAGGPWQFIGLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQDKDESISALPIDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVSTLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRGWSYVERPGILLMTAFVVAQLIATLIAVYANWSFAAIEGIGWGWAGVIWLYNIIFYIPLDFIKFFIRYALSGRAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQVPDTKFSDRTHFNELNQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDIDTIQQAYTV 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0556 1061 PANTHER CALCIUM-TRANSPORTING ATPASE 125 995 - -
Lele18g0556 1061 Gene3D - 449 596 IPR023299 GO:0000166
Lele18g0556 1061 SUPERFAMILY Calcium ATPase, transduction domain A 240 337 IPR008250 -
Lele18g0556 1061 FunFam Plasma membrane ATPase 449 596 - -
Lele18g0556 1061 FunFam Plasma membrane ATPase 240 324 - -
Lele18g0556 1061 FunFam ATPase 4 plasma membrane-type 681 927 - -
Lele18g0556 1061 Pfam Cation transporter/ATPase, N-terminus 126 189 IPR004014 -
Lele18g0556 1061 SFLD Haloacid Dehalogenase 419 747 - -
Lele18g0556 1061 Gene3D - 1010 1061 - -
Lele18g0556 1061 PRINTS P-type cation-transporting ATPase superfamily signature 613 623 - -
Lele18g0556 1061 PRINTS P-type cation-transporting ATPase superfamily signature 591 602 - -
Lele18g0556 1061 PRINTS P-type cation-transporting ATPase superfamily signature 437 451 - -
Lele18g0556 1061 PRINTS P-type cation-transporting ATPase superfamily signature 287 301 - -
Lele18g0556 1061 PRINTS P-type cation-transporting ATPase superfamily signature 696 715 - -
Lele18g0556 1061 PRINTS P-type cation-transporting ATPase superfamily signature 719 731 - -
Lele18g0556 1061 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 671 784 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele18g0556 1061 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 209 472 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele18g0556 1061 Coils Coil 1012 1032 - -
Lele18g0556 1061 CDD P-type_ATPase_H 142 953 IPR006534 GO:0008553|GO:0016020|GO:0120029
Lele18g0556 1061 Gene3D - 202 927 - -
Lele18g0556 1061 FunFam Plasma membrane ATPase 590 744 - -
Lele18g0556 1061 SFLD p-type atpase 419 747 IPR044492 -
Lele18g0556 1061 PRINTS H+-transporting ATPase (proton pump) signature 727 752 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele18g0556 1061 PRINTS H+-transporting ATPase (proton pump) signature 553 571 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele18g0556 1061 PRINTS H+-transporting ATPase (proton pump) signature 872 893 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele18g0556 1061 PRINTS H+-transporting ATPase (proton pump) signature 668 684 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele18g0556 1061 PRINTS H+-transporting ATPase (proton pump) signature 696 712 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele18g0556 1061 Gene3D - 240 324 - -
Lele18g0556 1061 Gene3D - 434 733 IPR023214 -
Lele18g0556 1061 Pfam haloacid dehalogenase-like hydrolase 433 710 - -
Lele18g0556 1061 Pfam E1-E2 ATPase 238 416 - -
Lele18g0556 1061 SMART Cation_ATPase_N_a_2 123 195 IPR004014 -
Lele18g0556 1061 SUPERFAMILY HAD-like 433 743 IPR036412 -
Lele18g0556 1061 Coils Coil 100 120 - -
Lele18g0556 1061 SUPERFAMILY Calcium ATPase, transmembrane domain M 123 959 IPR023298 -
Lele18g0556 1061 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 142 918 IPR006534 GO:0008553|GO:0016020|GO:0120029
Lele18g0556 1061 ProSitePatterns E1-E2 ATPases phosphorylation site. 439 445 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0556 Lele-ChrLele18 3277566 3283549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0556 107 1061 Primary Pumps ATPases AT3G47950 92.782 0.0 1796