Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0550 ATGAGGTCTCGCGTGCCCGAGATTCGAAGAAGGAGAAAAAAATTTGACCGCAACGAGGAAACGCTGCGAAGCATTAACGAACTAAATAGACTCAGACGAGAGTATTCCATGGTCAGTCTAACTGGGGTTATCTTCCCTGCATTGGATGTACATGTAAAAAATGTAGTATGTACTTATTCCCTTGGACATAATAGCACCGGTGAAGCCTTCAACTCAATCTTTCACTATTTGGATGAGTTGATGGATCCACATAGGAATATTTCCAAGCTGTTTCAAGAACTTATATGCTGCATTGGAATCTTGCAAGCCACCGCATTCCAGCATATGCAAAAGGAAGAAGAGCAGAGCATGATATGTACTTTCATATTCTTGAGTTCTGACTGTCATACATCTATTTCGAATTTGTGCAATTCTGCAGGTCTTTCCTCTCTTGATGCAGAAAGTTTCTATGGAGGAACAGGCTTTGCTGGTCTGGCAATTCATATGCAGTGTTCCTATAATGTTGCTGCAGGAAATTTTGCCATGGATGGTATCATTCCTTTCTGCAGACAAACAAGCAGAAGTCCGGAAGTTTTGATTACTTGGCTTGGTACCAATACCCAAATCTTCACCGAGGACTGTTCTCTGAATGAAGCTGATCAATGTGCTGACGGATTCCTACATATGAAAGGACCACGCGGGTTGAGTTATTGCAATAGGAATTTTAAAGCCATTTCAAATCATATGAAAGCAAATTGTTTAGACGTAGAAGATAGCGCCAATGAAGTTAATGTTCTTTATCTTTGGCATAATGCCATCAAGAAAGATATGAAAGAAATGTTAGAAGAACTTCATCAAATCAGAAACAACACTTGTTTTCATAACTTGGATTCTTTACTCATCCAACTAAAATTCTTCGCTGAAGTTCTCGTCTTCTACAGCAATGCTCAGAAGAAATTCTTTTACCCAGTTTTGAGTGAACTTGCTTATGGCTTGTTGACCAAGTCTAGTGAACAATTTCTTGGTGAAAGTCATATTGAAGATTTACAGCAGTTGCTATTGTATAATGCTGAAAGCGGTATGCCTTTGTCTGAATTCGTGGAGAAGCTTTGCAGAGAGCTTGAACTATTTATGACACGAATCAACAAACAATTTGCATTTCAAGAGACTGAGGCATTTCCTGTCATTCGCTTGAATCGCAACAATGAAATGCTAGAGGAACTCATTAGCTTGATCCTGCACATGATGCCGCTTGGGTTGCTGAAGTGCGTGATAACTTGGTTCTCAGGTCATTTGTCTGAAAATGAATCTAGGTCTATTCTCAGTGCCATAAAACAAGGAAATCCTTTTGTCCATGAAACTTTAGCATCACTAGTACATGAGTGGTTCCGTGTCGTCAAGGAAGCTCCCGGGTTTTCTTTCTTGAATTATGACAAGCCTCATAAAGGATCTATTGGTAACAATGGTTTGTCTTATTCATCATCTTCTGGATTCAACAATGTGACCAAGTATGAGACTCCATACTCTACGGTAATTAATATGCATATATTCTTCCTTGCCACAACGATGAAGTTAAATCACCGTCCTATATTTCAGGCAGCTGATAGTTCTTCTGCTCCCTTTCTTGATGATTCAAAACCTATTGACCTTATATTTTTCTTTCACAAGGCTATTAAGAAGGATTTGGATTACCTTGTTCTCGGATCAGCTCAGATAGAGAAAAATGTTGAGATGCTTGTGAATTTTAGCAAAAGATTCCATCTAATATGCTTTCTTCATCGAATCCATAGTGAGACAGAGGATGAGATAGCATTCCCAGCCTTGGAGGCAATGAGTAAAGTGAAAAACATTAGCCTCTCTTATACGATTGATCACAAAATTGAAGTTGAACACTTCAAAAAAATATCCTGCATCCTTGATAAGATGTTTGATCTGCATTTTTCAGTTTCTAGTTTTGAAACAAATACATGGGAGCAGAGAATGCTAACGCATCATCAACTGTGCAGAAGGCTGCAGGAAATGTGCAAATCAATGCATAAACTACTTTCTGACCATATGAATCGTGAAGAAATTGAAATTTGGCATTTAATTAGAGAATTCTTCTCCAATAAGGATCAAATAAAAATCATATGGTCCATGATTGCCAAAAATACGATGTTTGATGAATGGCTAGCTGAATGGTGGGATGGGTACAGGATAGCAAAGGAGATAGAGAGACCAAATGATCCTCCTCTTCAGACTGTTGAGCCGTTGGAGATAATATCTAAATATTTATCTAAAGAAGTTCTAGATGAACTCCAAGAAGAATCCTCTTCCAACAAAAGCGAATTTTCTTCACAGAGTGATCATATTGGTGATAATAATGAGCAGTCTCACCATTGCAATCGTCATGGCAAATCCCAGGTTCGTAAAGCAAAGAAGAATAGTAGTGAATGTTCAGAATGTAGGCATCAATTGAGTGATAATAACAAACAAACATGCACTAAAGTAACAGATATAACAAGTTCGATCAATGACAAAGGTCAGTCTCTCCAATTCTGTGAAAACTTTGAGCACTATGACCATCTTATGAAGATAAGTCCAGATGATCTGGAGATGGCCATAAGAAGGGTATCTCGTGACTCTTCCTTAGATCCGCAGAAGAAGTCATACATAATCCAGAATCTGCTGATGAGGAAATCTATTACAAAGATGGTGTGCATGAAGTGCTTGAAGATTCAGCCAATTGGTGCCACGTGTTCAACTGTATCTTGCGGTAACTTACCCATGGCAAAATACTACTGCAGGATCTGTAGATTGTTCGATGATGAAAGAGAGAAATCTTTAGAGGATAACTGCCCAATTTGTCATGAATACATCTTTACGTCCTGCTCTCCAGTAAAGGCCCTTCAATGTGGTCATGTCATGCACTCAACATGTTTTCAGGACTATACTTACTTCAATTATACCTGTCCAATATGTTACAAGTCACTTGGAAACATGCAGGTATGTTTTAGGATGTTAGATGCGTTATTGGCTGAAGAGAAAATGCCAGACGAGCATTTGGGTCAAACTCAGCTCCATTTCACTGGCTTTACCACAAATGCTCTTCTTGCGGGTCCTACAACACCAGAGTTACATGACTCTTCCATTAGCAGCAATAATTGCTTCTAG 3132 0.3883 MRSRVPEIRRRRKKFDRNEETLRSINELNRLRREYSMVSLTGVIFPALDVHVKNVVCTYSLGHNSTGEAFNSIFHYLDELMDPHRNISKLFQELICCIGILQATAFQHMQKEEEQSMICTFIFLSSDCHTSISNLCNSAGLSSLDAESFYGGTGFAGLAIHMQCSYNVAAGNFAMDGIIPFCRQTSRSPEVLITWLGTNTQIFTEDCSLNEADQCADGFLHMKGPRGLSYCNRNFKAISNHMKANCLDVEDSANEVNVLYLWHNAIKKDMKEMLEELHQIRNNTCFHNLDSLLIQLKFFAEVLVFYSNAQKKFFYPVLSELAYGLLTKSSEQFLGESHIEDLQQLLLYNAESGMPLSEFVEKLCRELELFMTRINKQFAFQETEAFPVIRLNRNNEMLEELISLILHMMPLGLLKCVITWFSGHLSENESRSILSAIKQGNPFVHETLASLVHEWFRVVKEAPGFSFLNYDKPHKGSIGNNGLSYSSSSGFNNVTKYETPYSTVINMHIFFLATTMKLNHRPIFQAADSSSAPFLDDSKPIDLIFFFHKAIKKDLDYLVLGSAQIEKNVEMLVNFSKRFHLICFLHRIHSETEDEIAFPALEAMSKVKNISLSYTIDHKIEVEHFKKISCILDKMFDLHFSVSSFETNTWEQRMLTHHQLCRRLQEMCKSMHKLLSDHMNREEIEIWHLIREFFSNKDQIKIIWSMIAKNTMFDEWLAEWWDGYRIAKEIERPNDPPLQTVEPLEIISKYLSKEVLDELQEESSSNKSEFSSQSDHIGDNNEQSHHCNRHGKSQVRKAKKNSSECSECRHQLSDNNKQTCTKVTDITSSINDKGQSLQFCENFEHYDHLMKISPDDLEMAIRRVSRDSSLDPQKKSYIIQNLLMRKSITKMVCMKCLKIQPIGATCSTVSCGNLPMAKYYCRICRLFDDEREKSLEDNCPICHEYIFTSCSPVKALQCGHVMHSTCFQDYTYFNYTCPICYKSLGNMQVCFRMLDALLAEEKMPDEHLGQTQLHFTGFTTNALLAGPTTPELHDSSISSNNCF 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0550 1043 Pfam Ring finger domain 937 980 IPR001841 -
Lele18g0550 1043 MobiDBLite consensus disorder prediction 762 798 - -
Lele18g0550 1043 Gene3D nmb1532 protein domain like 9 121 - -
Lele18g0550 1043 Gene3D nmb1532 protein domain like 538 711 - -
Lele18g0550 1043 Gene3D nmb1532 protein domain like 250 408 - -
Lele18g0550 1043 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 932 982 IPR013083 -
Lele18g0550 1043 Coils Coil 263 283 - -
Lele18g0550 1043 CDD RING-H2_Pirh2 938 981 - -
Lele18g0550 1043 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 584 934 - -
Lele18g0550 1043 SUPERFAMILY RING/U-box 933 985 - -
Lele18g0550 1043 SMART ring_2 939 980 IPR001841 -
Lele18g0550 1043 FunFam Zinc finger protein-related isoform 1 934 983 - -
Lele18g0550 1043 CDD Hr-like 542 687 - -
Lele18g0550 1043 ProSiteProfiles Zinc finger RING-type profile. 939 980 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0550 Lele-ChrLele18 3240574 3247125 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0550 534 707 C2H2 Transcription Factor Family AT3G18290 25.281 7.02e-09 58.2