Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0543 ATGGTGAGGCCTCCATGCTGCGAGACGCTCAGTGTTAATAAAAGAGGTGTTTGGACTCCAGAAGAAGATGCAAAGATGATCGCATTTGTCTCAAATCATGGACCTGGTAATTGGACTTGGGTTCCCAAAAAAGCAGGTTTAAAGAGGTGTGGGAAAAGTTGCAGGCTCAGGTGGACCAATTACCTCAGACCAGATCTTAAGCATGATAGCTTCGCACCCCATGAAGAGGATTTAATTCTTAAGCTTCACGCAGCCATTGGAAGCAGATGGTCTATGATCGCCCAACAACTTCCTGGGAGAACAGACAACGATGTAAAGAATTACTGGAACACAAAGCTGAAGAAGAAGCTCGCTTCCATGGGAATAGACCCTGTCACTCACAAGCACTTTTCTAAACTCCTAGCTGACTATGGAAACATTGGGGGTATGCAGAAACCAAGCATCCGAATTGGCTCTCACAGTGAAGACTTGAAGAACACAGTTTTGTTCAAATCAGACCCATTTCCGAAGCTACCTACTTCAACTTCAACTTCTTCACCAAAACTGGAACCACCAACAGAAAGTAGCTTTTTCAGTAACAGAGACGTCATGGAGAAGGAGGCAATCCCAGCAGCTATATTAGGGGAAGGCTTCTTGTCGTCGTTGTCCTGCTCGTCTACTTCTTCTCTTTGTTCCAATAATAATGCTGCCCAAGAAGGCTTGTCTTTACCCTTTTGTTGGAATGATTTTCTTCTTGAAGATGTTTTCCTACCTCCTCCTGCTGCTGATAACAACCTAGACAATGAAAATCCAACAACGTACGAGAATAAGAATGAGGTGACGTCACAGCAACTCCCCAGCAGTGAGGTTCAGTATTCATCGTCGTCATCCTCTGACATTTCATTCGTAGAAGCCATGCTTGATCCAGAAAATGAAATGTTCTTGAATTTCCCTCACCTAATGGAGGAACCCTCCACAAATTCTCAATTCGACTTTGGGTTGATTGGGGACGAAGAAAACTCGGCGAAGATGGTGGCCATTTCGCTTTACAGAGGGAATCTCCACAGAGTACCGGACGTGCCTCGTCGATGGCTCATGCCAGCTCCGAAAATTTCTCTCAAAGAATTTAAATCGCTTCTTGCGCGTCGCTCAAAGGCCCTCTCCCGCCTCCTTGCAGACGGGGCGGTTACTTCCACCACCACGACCCTCTCGATCCCTAACCTTGGCTCTCTATCTAACGGTCAAAATGAGGTTCCTATAATTGATAAGCCGTCAATTGCGATTCAACCCGAATCAGAGAAGGTCAGTGATAATGGAGCGGGTCATTCGCGGGAGGGCGAAGATCACAAGGAACCGGAACTCTGTAATATTTCCGTCAAGAAAACAGTTGATGAGTCTGATTCGTTAGCTGATGCTAAGACTGATGCAGTAGAGAAAGCGTCTGAACCGTTCAACGGCGATGCCTCTTTAGTAACAAAGCAGACCGAGACGATCGGAGACAAAGAAGGTATGGTAAATGTCAAAGGGAAAAGGAAAAAAGAAGTTGAGGATAAGTTACAAGTTTTGAATGCAAAAAAACATAATCTTGTTATAGCATTGAAGCAGATCTTAAATGTGGAGGAAGAATTAAAACGACGAACTAGTGTGCAAGGAATTGTCTTGCGCCCTTCAGTTCCATTTCAAGCTGAAGGAACAAACGATACAGGTTCACTGACTAGGCATATGATTCCAAGAGTGGGGTCAGAAGCAAATCTTGGTGGTGATGTGGAAGGGAGTGAAACTGATGATCCTTCAAACCATAACATGCACTCTCGTAATGTGCATTGGATGAGTAGTAGCATGTCACCTTCGGAATCCCCTCTTAGGAGGACGCCCAGTTTTCAACAAAACATGGTTTCACTGGCGTCAAGAGCAAGTATGGGGGTGAGTGGAAGTCCATCACGATTTGCACTTTCACAACAAGGCAATGCCATGAATGCAGCTTCAGTTTCGGTATCTGTGTCAGGCACAGGTTACGTTGCGTCATCGCCTTCCCCAGCTGCTTCTGGTGGCACTTCTGTTTTCAGAGATGCTCGCCACCCTAGTCCCTGGAACTGA 2076 0.4566 MVRPPCCETLSVNKRGVWTPEEDAKMIAFVSNHGPGNWTWVPKKAGLKRCGKSCRLRWTNYLRPDLKHDSFAPHEEDLILKLHAAIGSRWSMIAQQLPGRTDNDVKNYWNTKLKKKLASMGIDPVTHKHFSKLLADYGNIGGMQKPSIRIGSHSEDLKNTVLFKSDPFPKLPTSTSTSSPKLEPPTESSFFSNRDVMEKEAIPAAILGEGFLSSLSCSSTSSLCSNNNAAQEGLSLPFCWNDFLLEDVFLPPPAADNNLDNENPTTYENKNEVTSQQLPSSEVQYSSSSSSDISFVEAMLDPENEMFLNFPHLMEEPSTNSQFDFGLIGDEENSAKMVAISLYRGNLHRVPDVPRRWLMPAPKISLKEFKSLLARRSKALSRLLADGAVTSTTTTLSIPNLGSLSNGQNEVPIIDKPSIAIQPESEKVSDNGAGHSREGEDHKEPELCNISVKKTVDESDSLADAKTDAVEKASEPFNGDASLVTKQTETIGDKEGMVNVKGKRKKEVEDKLQVLNAKKHNLVIALKQILNVEEELKRRTSVQGIVLRPSVPFQAEGTNDTGSLTRHMIPRVGSEANLGGDVEGSETDDPSNHNMHSRNVHWMSSSMSPSESPLRRTPSFQQNMVSLASRASMGVSGSPSRFALSQQGNAMNAASVSVSVSGTGYVASSPSPAASGGTSVFRDARHPSPWN 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0543 691 Coils Coil 505 525 - -
Lele18g0543 691 ProSiteProfiles Myb-like domain profile. 14 62 IPR001005 -
Lele18g0543 691 Gene3D - 15 67 - -
Lele18g0543 691 CDD SANT 18 62 IPR001005 -
Lele18g0543 691 MobiDBLite consensus disorder prediction 254 286 - -
Lele18g0543 691 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Lele18g0543 691 Pfam Myb-like DNA-binding domain 70 111 IPR001005 -
Lele18g0543 691 SUPERFAMILY Homeodomain-like 14 109 IPR009057 -
Lele18g0543 691 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 66 IPR017930 -
Lele18g0543 691 SMART sant 67 115 IPR001005 -
Lele18g0543 691 SMART sant 14 64 IPR001005 -
Lele18g0543 691 Gene3D - 70 132 - -
Lele18g0543 691 MobiDBLite consensus disorder prediction 168 189 - -
Lele18g0543 691 MobiDBLite consensus disorder prediction 662 691 - -
Lele18g0543 691 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lele18g0543 691 MobiDBLite consensus disorder prediction 662 676 - -
Lele18g0543 691 MobiDBLite consensus disorder prediction 258 286 - -
Lele18g0543 691 CDD SANT 73 113 IPR001005 -
Lele18g0543 691 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Lele18g0543 691 MobiDBLite consensus disorder prediction 418 443 - -
Lele18g0543 691 FunFam Os07g0634900 protein 70 129 - -
Lele18g0543 691 MobiDBLite consensus disorder prediction 169 189 - -
Lele18g0543 691 PANTHER F14D16.11-RELATED 1 318 - -
Lele18g0543 691 MobiDBLite consensus disorder prediction 575 598 - -
Lele18g0543 691 FunFam MYB-related transcription factor 14 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0543 Lele-ChrLele18 3196580 3200860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0543 1 316 MYB Transcription Factor Family AT3G28470 45.345 3.68e-71 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele18g0543 Myb_DNA-binding 6.9e-13 CL0123