Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0541 ATGGATCCTCCCCTCATCAACGAGTCTACATTCTCCCACGCTAATCCTTCTTCCTATAGTCTCGCCGAGATTTGGCCTTTCCCTGAGGACCACCCTCCCGGACCTGGATTGGGCCTCCGATTGCCCCATTTAGGTCATAATTTGGCCTCCTTTCCCGGAGATGGCTCCGCCGGGGAGTCCACCGTCACGGAGCAGAGCGTCGGCGGCGGAGGAAATCACAGGAAGAGGAAAGATGCCACCTCTGAGGACGAGTCCTCAAACATGGTTTCCATGATTAGTGCCAATGATTTGAATGATTCTGGAAATAAACGGATAAAATTAGGAGTATCCAAGGATGAAAATGGTGGTCTGAAGGCTGAAGCAGAAGCAAGTTCAGTAGCTGGTAGCAAGTCAGCTGAACAAAGTACTAAACCTCCTGAGCCACCTAAGCCAGACTATATACACGTGAGAGCAAGAAGAGGCCAAGCTACTGATAGCCACAGTCTTGCAGAAAGAGCAAGAAGGGAAAAGATCAGCGAGAGGATGACAATTCTACAAGATTTGGTCCCTGGATGTAACAAGGTAATTGGTAAAGCACTTGTCCTGGATGAGATAATCAATTATATTCAATCGCTGCAGCGGCAGGTTGAGTTCCTTTCGATGAAGGTCGAAGCAGTTAATTCGAGAATGAACATTAACCCAACTATTGAAGGGTTCCCTTCGAAAGATCTTGGTGCACAGACACTTGACGTTGCTGGAATGATTTTTGGATCACAAGCAGGCAGGACTTATGCTCAGGGAACACAACTGGGATGGCTGCAAATGCAGATAGGGGGTGGTGGTGGTGGTTTCGAGAGAGCAACATAG 846 0.4835 MDPPLINESTFSHANPSSYSLAEIWPFPEDHPPGPGLGLRLPHLGHNLASFPGDGSAGESTVTEQSVGGGGNHRKRKDATSEDESSNMVSMISANDLNDSGNKRIKLGVSKDENGGLKAEAEASSVAGSKSAEQSTKPPEPPKPDYIHVRARRGQATDSHSLAERARREKISERMTILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKVEAVNSRMNINPTIEGFPSKDLGAQTLDVAGMIFGSQAGRTYAQGTQLGWLQMQIGGGGGGFERAT 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0541 281 Pfam Helix-loop-helix DNA-binding domain 159 206 IPR011598 GO:0046983
Lele18g0541 281 FunFam Basic helix-loop-helix transcription factor 152 224 - -
Lele18g0541 281 CDD bHLH_AtBPE_like 145 228 - -
Lele18g0541 281 Gene3D - 152 228 IPR036638 GO:0046983
Lele18g0541 281 MobiDBLite consensus disorder prediction 54 68 - -
Lele18g0541 281 SMART finulus 161 211 IPR011598 GO:0046983
Lele18g0541 281 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 155 205 IPR011598 GO:0046983
Lele18g0541 281 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 153 225 IPR036638 GO:0046983
Lele18g0541 281 MobiDBLite consensus disorder prediction 25 146 - -
Lele18g0541 281 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 74 248 IPR024097 GO:0006355
Lele18g0541 281 Coils Coil 202 222 - -
Lele18g0541 281 MobiDBLite consensus disorder prediction 84 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0541 Lele-ChrLele18 3182862 3185490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0541 1 281 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 54.949 8.49e-87 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele18g0541 HLH 3.4e-08 No_clan