Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0531 ATGGCTAGTGATGTTCTCCGGCCCTGTTGCAGTTCCGGTGAGCTGCATGTTCTTGCCGTGGATGATAGTTATGTCGATCGGAAGGTCATTGAGAGATTGCTTAAAATTTCTTCTTTTAAAGTGACGGTTGTGGAGAGTGGAACTAGAGCTCTTGAATATTTGGGATTGGATGGACAGAAGAGCTCCATTGGATTTGAGAGTGTCAAGGTTAATCTGATAATGACGGACTATTCAATGCCTGGGATGACTGGATATGAGCTGCTCAAGAAGATCAAGGAATCATCCAGTTTTAGAGAGATTCCAGTAGTGATCATGTCATCTGAGAATATCTTGACTCGAATTGATAGATGCTTGGAGGAAGGAGCAGAGGAGTTTCTGTTGAAGCCAGTGAAGTTGGCAGATGTGAAACGATTGAAAGAGTTCATAATGAAGGGTGAAGGAAAGGAAATTGGAGAGAGAGAATCTCACAAGAGAAAGAGATCAGATGATTGCAGTGAACTTCCACCAACTCCATTCTCATCTCTATCTTATCCTTGTGAACCATCATCTTCTTCACCATCTGCATTGTCCTCAAAGAAGCCTAGATTGCTAGCAGAGGTGTCGATGATGCCACCAAGTTGTTATAATTGGATTTCACTGTTGGGAGTTGAGGGGACAGTAATATGCAAAAGAAGTTCCGAGGCAGATTGGTTGCTCGTATATTTTAAGACCTTGGAAACAAAAAAGTTGAATTATGCAGAGATAAAAGACAAGGCCAGGGTGAAACCCCTAGCATATTTGAGTTCATCAATGTCTACCCCTAGTCATGCAATTGCAAGGGCTGTGGCTGTTACTGCAACTGTTGTGTTGTTAGTTTCTGGGATTTTGTTTTACTTGTTCTATAAGTTTGTTCTATGTCGATACAGCCAAAGGCACAAGGGTGCTGCTGCTATTCTGCGTGATAAAGGAGTGAAACATCAGGACATACAGGAAGTTAGTGGCAAAGTGAAAGGATTGGTCGTTGAAGAAGATGGAATCCATATTCTTTACATGGTGGAAGCAGATGGTAGACCAGTGAGAAGTAGATTCCCAAAATGTTGGTTTAATCCAAGTTATGAAAGTTCTGAAGAATTCATGAAAATAAATGTCAAACCAGTATTTTCCCCAGTACCTACTCTGCCTTCTTCAGTTTCTACATCATCCCCTCTAAAGCCTCCTCCTCCTCCACCGCCCCCGCCACCTCCTCCGAGAAAGGAAATTACAAAGATGCCACCTAAGCCTCCAACACTACCACCTCCACCTCCAAAGGCATCATTGAGACCCCCACCTGCACCTAAAGGGAAAGCAAACATGCAGAACAGAAAAGAGGGAACCCTAGACAAGAGTTCAAGAGACAAAGATGGTGACACTAAAAGGTTGAAGCCTCTTCACTGGGATAAGGTTGCAGCCAATGTTGATCATTCAACAGTGTGGGATCAGATTAATGATGGCTCTTTCTTGTTTGATGATCAACTCATTGTGAAACTATTTGGATATTCAAGCAACAACAAAACCCAAGAAAGATACATGAATCTTTCAACCAATTCCAACTCCATTTCACCACCTCAAATATTCATTTTAGAGCCTAGAAAATCCCAGAACACTGCGATTGTGCTGAAGTCTTTAGCAATTTCTCTTGATGAAATCCTAGAAGCCCTCCTTGATGGCCAAGGACTTAGTGCTGACATGCTTGAAAGACTCACCAGATTAGCTCCAACTCAAGACGAAATAGCCAAAATCATCAATTTCAATGATGACCAAGGTAAACTAGCAGATGCAGAGTCTTTCCTTTACCACATCCTCAAAGCAGTACCAACAGCATTTACTCGTTTGAAAGCAATGCTTTTCAGATCAAACTATGATTCTGAAGCACTTCAGCTTAAAGAAAACCTGGGAACACTCGAAATGGGATGTAAGGAACTAAGGACTAGTGGTCTCTTTAGAAAACTCCTAGAAGCCATTCTCAAAGCTGGGAACAGAATGAATGCTGGAACTTCAAGAGGCAATGCACAGGGTTTCAACCTAAACTCTCTCAGCAAGCTTTCTGACGTGAAAAGTACAGATGGTAAAACGAGTTTGCTTCACTTCATTGTGGAACAAGTAGTTCATTTAGAAGGTAGAAGAGAAGCTTCGTATCAGAAGCAGAAGAACCTGACAGACAGAGAATATCTAACGCTTGGCTTACCAGTACTTGGAGGTCTAAGTGATGAGTTATCTGAAGTAAGAAAAGCAGCAAACATAGAACATCACAGTTTCATCAGTTTGTGTACAACTTTGCATGCTCATGTCACTGAAATTCGCCAGATTATGACATGTTGTAATAACGGTGATCAGAGAGATGGGTTTATTAAGGAAATGAAAGGGTTCTTAGAGGACTGTGACGAGGAACTGTAG 2412 0.4175 MASDVLRPCCSSGELHVLAVDDSYVDRKVIERLLKISSFKVTVVESGTRALEYLGLDGQKSSIGFESVKVNLIMTDYSMPGMTGYELLKKIKESSSFREIPVVIMSSENILTRIDRCLEEGAEEFLLKPVKLADVKRLKEFIMKGEGKEIGERESHKRKRSDDCSELPPTPFSSLSYPCEPSSSSPSALSSKKPRLLAEVSMMPPSCYNWISLLGVEGTVICKRSSEADWLLVYFKTLETKKLNYAEIKDKARVKPLAYLSSSMSTPSHAIARAVAVTATVVLLVSGILFYLFYKFVLCRYSQRHKGAAAILRDKGVKHQDIQEVSGKVKGLVVEEDGIHILYMVEADGRPVRSRFPKCWFNPSYESSEEFMKINVKPVFSPVPTLPSSVSTSSPLKPPPPPPPPPPPPRKEITKMPPKPPTLPPPPPKASLRPPPAPKGKANMQNRKEGTLDKSSRDKDGDTKRLKPLHWDKVAANVDHSTVWDQINDGSFLFDDQLIVKLFGYSSNNKTQERYMNLSTNSNSISPPQIFILEPRKSQNTAIVLKSLAISLDEILEALLDGQGLSADMLERLTRLAPTQDEIAKIINFNDDQGKLADAESFLYHILKAVPTAFTRLKAMLFRSNYDSEALQLKENLGTLEMGCKELRTSGLFRKLLEAILKAGNRMNAGTSRGNAQGFNLNSLSKLSDVKSTDGKTSLLHFIVEQVVHLEGRREASYQKQKNLTDREYLTLGLPVLGGLSDELSEVRKAANIEHHSFISLCTTLHAHVTEIRQIMTCCNNGDQRDGFIKEMKGFLEDCDEEL 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0531 803 SMART it6_source 456 803 IPR015425 -
Lele18g0531 803 MobiDBLite consensus disorder prediction 385 465 - -
Lele18g0531 803 Gene3D Formin, FH2 domain 455 803 IPR042201 -
Lele18g0531 803 MobiDBLite consensus disorder prediction 446 465 - -
Lele18g0531 803 SUPERFAMILY Formin homology 2 domain (FH2 domain) 399 802 - -
Lele18g0531 803 MobiDBLite consensus disorder prediction 150 190 - -
Lele18g0531 803 MobiDBLite consensus disorder prediction 393 435 - -
Lele18g0531 803 MobiDBLite consensus disorder prediction 167 190 - -
Lele18g0531 803 MobiDBLite consensus disorder prediction 150 165 - -
Lele18g0531 803 Gene3D - 15 169 - -
Lele18g0531 803 CDD REC_typeA_ARR 17 138 - -
Lele18g0531 803 SMART REC_2 15 139 IPR001789 GO:0000160
Lele18g0531 803 ProSiteProfiles Response regulatory domain profile. 16 143 IPR001789 GO:0000160
Lele18g0531 803 ProSiteProfiles Formin homology-2 (FH2) domain profile. 456 803 IPR015425 -
Lele18g0531 803 PANTHER FORMIN-RELATED 186 802 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Lele18g0531 803 Pfam Response regulator receiver domain 17 135 IPR001789 GO:0000160
Lele18g0531 803 SUPERFAMILY CheY-like 14 138 IPR011006 -
Lele18g0531 803 Pfam Formin Homology 2 Domain 459 803 IPR015425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0531 Lele-ChrLele18 3131485 3136356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0531 271 803 FH2 protein (formin) Gene Family AT1G70140 39.460 4.04e-116 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele18g0531 FH2 1.1e-91 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele18g0531 18 3131485 3136356 Lele21g1843 21 25937817 25943704 CCT
Lele18g0531 18 3131485 3136356 Lele22g1817 22 23249165 23252335 CCT
Lele18g0531 18 3131485 3136356 Lele23g0169 23 1069444 1072858 CCT
Lele18g0531 18 3131485 3136356 Lele24g1772 24 22896136 22901242 CCT
Lele18g0531 18 3131485 3136356 Lele19g0555 19 3199480 3201549 hybridization