Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0526 ATGGGCGGCAATGGCAGGCCCAGGTGGAAGATCTCTTTCCATCGCAATTCCCCAAGCTCCAAGCTCCAATCAAAAGAGCCTCCCGTCCAGTTTCTATGCCCAATTTCTGGGTCTCTCATAGCTGAACCCGTCATTGTCGCTTCCGGTCAGACTTTTGAATCGGTTTCTGTTCAAGTGTGCACAGACTTAGGTTTCTCTCCCAAGCTTGAAGACGGGTCCACCCCTGACTTCTCCGCTGTGATTCCGAATTTGGCTCTCAAATCCACCATATCCAATTGGTGTGTTAAATCCGGCGTGGTGAACCCTCGCCCGCCAGAGTATAGCTCCGTGGAGAGGATCGTCCGTACAGCTATGGCGTCCCCGCTCGAAAATCAAGAGTCAGGTTTAAGGGCTTCGGATAGGGAATTGCTCGAGTCCGTGCCGGATAATCCACCGGTCATTTTCTCTCACGCCGCCACGGAGTTGGGGCCCCGGGTCAACCCATTCGAAACGAGATCATCCGAGTCGGCTATCGCCGCTGGGTGTCCACAGACTCCTTTGCCTTTCGAGACTCGTCCCACCTGTTACTCGTCTTCGTCTTTTTCTGTCGAAATTAACGAGAATGAACACCAAAACCAGAACCCTATTTGTCCAATTTCGGAGGAAGAGGAGAAATTAGTGCTGGAGCTGAGGAGCGACGAAGCTTCTGAACAGGAAGTAGCGGTTATTTCGCTCAGAAACATCACCAAGACAAGAGAGGACACCAGAATTTCTCTTTGCACGCGTGCGTTACTATCGTCACTCCGATCACTGATCTCGTCGAAGCATCCCGTCGTGCAAGTAAACGCCGTCGCCTCACTGGTTAATTTCTCCCTCGATAAATCTAACAAAGTGAAAATCGTAAGGTCTGGATTTATCCCTTCGCTCATTGAAGTCTTGAAAAGTGGATTCCCCGAGGCGCAGGAACACGCAGCTGGAGCACTATTTAGCCTGGCCTTAGACGACGAGAACAAAATGGCGATCGGCGTTTTGGGCGCGTTGGAGCCACTCATGAACGCGTTGGATTCCGAGTCGGAACGGACTCGGCACGACTCGGCGCTCGCGTTGTACCACCTGACCCTGGTCCAGAGCAACAGTGTGAAGCTGGTGAAGCTCGGAGTGGTGCCAGCGCTGCTATCAATGGTGAAATCGGGGGATTTGGCGAGCCGTGTTTTGATGATTCTGTGTAATATAGCGGCGGGCACGGAGGGGAGAACGGCGATGCTGGACGCGAATGCGGTGGAGTGCTTGGTGGGTGTGCTGAGGGAGAAAAGGGGGGCCGAGGAGGAGGCGACGAGGGAACACTGTGTGGCTGCGTTGCATGGAATGAGCCATGGAAGCTTGAGGTTCAAGGCGTTGGCAGTGGAAGCTAGGGCTGTGGAGGTTTTGAGAGAGGTTGAAGAGAGAGGATCACCGAGGGCGCGAGAGAAGGCCAAGAGGATGTTGCAGATGGTGAGAGCTGGAGGAGAAGAGGATGACAAAAATGGCGTCGGTTCGGATGGGGCATTGGGCTCGGGTGTCCCTGTGGTGCAGAGGGCGGGAAGCCATTCTGACACATGGCGAGTGTTCGATTTGAAGAGCTCTGTGATTGTAGTCTACTACTATGGATGGTCCCCCGTGGACAGTGTGATTCCTGAGGCTGAGGAAATGCCAATCCAAGAAGCGGTGGAGCCGGGTCATAACCCGGTCGTGTTGTCCTGCTTAACCCGGACCCTGCACAACCAAGCTCCACTCTGTACTAGAACCTCCCTTCCAAGCATTCTACTCGGTCTTCATTCTCCGACAAGAAGGGTATGGGAGGGCTCCAAATATCTGAGCTTTGCTTCTGGCCAAAGCACCAAAAGGAAGAGTGAACTTTTGGTGAGGCTTGAAGAAGCATCCCAGAAGCAAACAAGCTCTGGATTATGGTTCCGGATCCGCATGTTGCTCCTTTCCACTGCGACCTCACACCACCCTTCTTCTTCTTCTTCTTCTTCCTCTCTGTGCTGCTCTAATTCCTTCATGTCGAACAAGAGGGGTTATGATGATGGCAAGCCAAAATCCGATAGTGGCAGTCCCGAGGATAAGCGAAGAAAGGTTCCTGCTTTTACCAATGTGGTTCGTGAGGTGATGAAGTTACATTCAGTTGGCCATCTGCTGGAACCAATTTTAGAGCCCTTGATTCGCCGAGTGGTTAAGGAGGAAGTTGAATTGGCCTTAAGGAAGCATATAGTCAACCTGCGACGGATACGTGGGAAGGAAATGCATGCTTTCGAATCGAGAAACTTACAGCTGCAATTTGAAAACAATATATGTCTTCCTGTTTTTACTGGGGCTCGAATTGAAGGAGAGGATGGATCCAACTTAAGGGTGTGTTTAGTCGATTCCGAGAAGGGCGAAGTTGTTAGTTCGGGACCTGAATCCTCAGCTAAGGTGGAAATTGTAGTCCTTGAAGGTGATTTTGAAGATGAAAGCGACTTGTGGGTCTCAGAAGATTTCAAAAACAACATTGTAAGAGAAAGAGAAGGAAAAAAGGCCCTTCTTATGGGAGATGTAGTTTTGCATCTCAAAGATGGGATTGGTATGGTGGGGGAAATTTCATTCACAGATAATTCAAGCTGGACAAGGAGCCGTAGGTTTAGGCTCGGGGTAAGAGCTGTTGACAACTTTGATGGAATTAGAATAAGAGAAGCAAAGACCGAGTCATTTATCGTCAGAGATCATCGAGGAGAATTGTACAAGAAACACCACCCTCCTAATTTGTTTGATGAAGTTTGGAGATTGGAAAAGATTGGAAAAGATGGAGCTTTTCACAGGCGTTTGAGCAGAGAAAAGATCAATACAGTGATGGATTTTCTCACACTCCTCAATCTAGACCCAACAAAGCTACGCAGTATATTAGGCACTGGCATGTCTGCAAAAATGTGGGAAGTAACAGTGGAGCATGCTAAAAAATGTGTACTTGATAGTAGGAGATACTTGTACTTCCCTTCTGATTCTCAGAATAAAACTGGTATTGTCTTCAATGCTGTGGGACAACTGACTGGGATTCTCTCTGAAGGCCTGTATGTAACTATAGATAAGCTCTCTGAAGCAGAAAAGGTTGAATTTCGGTTGTCTGTAATTTCTGCATACAAGCAAGGGGATAACGTAGCTGCTTTTGAGGATGAGGCTTCTCTTATAGATAACTCTTCACACTTAACTAATGCAATTTACTCGCCAAGCTCGCTTAAGACCGAGGGATCCAGTGCCAATAAGGCTTTAGCTCCTCAAAAAACTGGTGGATTTGATTACACACAAGCAAGTACCTCGTCACCAGATATCATGTCATCTCTCTATTCTGTTGGTGGGACTAGTAGTTTTGATGACTATGGCTTGGCCAGTTTTGAAAGCTTGGGGCTGAGATATGATCAAGCTCATGGTTTTCCAGTTCAAGTCACTAACTCTCTAATGACCGAAACAGACCCTATGGCACACCCTTTTGGAGACGATATGCAATTCTTTGATCCTACTGATCTTCAGTCTCATTGTAATATTCTGGATTCACAGGCAGATTTGCAGAGTGCTGTGGATGGCTTTATGCTTGCTCGTTCCACAGCCTTGGCCATGGGTAAAGCTCAGAGGAGATGGAGAAAACTGTTCAACGTCCTGAAATGGTTCATGGTGAGTAGTATCAGATCAAAAAGAAATCAAGTTGGACATAGTGAAAGACACATTAAAGAGTTGTGA 3726 0.4831 MGGNGRPRWKISFHRNSPSSKLQSKEPPVQFLCPISGSLIAEPVIVASGQTFESVSVQVCTDLGFSPKLEDGSTPDFSAVIPNLALKSTISNWCVKSGVVNPRPPEYSSVERIVRTAMASPLENQESGLRASDRELLESVPDNPPVIFSHAATELGPRVNPFETRSSESAIAAGCPQTPLPFETRPTCYSSSSFSVEINENEHQNQNPICPISEEEEKLVLELRSDEASEQEVAVISLRNITKTREDTRISLCTRALLSSLRSLISSKHPVVQVNAVASLVNFSLDKSNKVKIVRSGFIPSLIEVLKSGFPEAQEHAAGALFSLALDDENKMAIGVLGALEPLMNALDSESERTRHDSALALYHLTLVQSNSVKLVKLGVVPALLSMVKSGDLASRVLMILCNIAAGTEGRTAMLDANAVECLVGVLREKRGAEEEATREHCVAALHGMSHGSLRFKALAVEARAVEVLREVEERGSPRAREKAKRMLQMVRAGGEEDDKNGVGSDGALGSGVPVVQRAGSHSDTWRVFDLKSSVIVVYYYGWSPVDSVIPEAEEMPIQEAVEPGHNPVVLSCLTRTLHNQAPLCTRTSLPSILLGLHSPTRRVWEGSKYLSFASGQSTKRKSELLVRLEEASQKQTSSGLWFRIRMLLLSTATSHHPSSSSSSSSLCCSNSFMSNKRGYDDGKPKSDSGSPEDKRRKVPAFTNVVREVMKLHSVGHLLEPILEPLIRRVVKEEVELALRKHIVNLRRIRGKEMHAFESRNLQLQFENNICLPVFTGARIEGEDGSNLRVCLVDSEKGEVVSSGPESSAKVEIVVLEGDFEDESDLWVSEDFKNNIVREREGKKALLMGDVVLHLKDGIGMVGEISFTDNSSWTRSRRFRLGVRAVDNFDGIRIREAKTESFIVRDHRGELYKKHHPPNLFDEVWRLEKIGKDGAFHRRLSREKINTVMDFLTLLNLDPTKLRSILGTGMSAKMWEVTVEHAKKCVLDSRRYLYFPSDSQNKTGIVFNAVGQLTGILSEGLYVTIDKLSEAEKVEFRLSVISAYKQGDNVAAFEDEASLIDNSSHLTNAIYSPSSLKTEGSSANKALAPQKTGGFDYTQASTSSPDIMSSLYSVGGTSSFDDYGLASFESLGLRYDQAHGFPVQVTNSLMTETDPMAHPFGDDMQFFDPTDLQSHCNILDSQADLQSAVDGFMLARSTALAMGKAQRRWRKLFNVLKWFMVSSIRSKRNQVGHSERHIKEL 1241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0526 1241 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 297 334 IPR000225 GO:0005515
Lele18g0526 1241 SUPERFAMILY RING/U-box 17 102 - -
Lele18g0526 1241 Gene3D - 213 490 IPR011989 -
Lele18g0526 1241 Pfam U-box domain 29 95 IPR003613 GO:0004842|GO:0016567
Lele18g0526 1241 Pfam Armadillo/beta-catenin-like repeat 288 325 IPR000225 GO:0005515
Lele18g0526 1241 Pfam Armadillo/beta-catenin-like repeat 327 366 IPR000225 GO:0005515
Lele18g0526 1241 Pfam Calmodulin binding protein-like N-terminal domain 762 907 IPR046831 -
Lele18g0526 1241 SMART arm_5 368 406 IPR000225 GO:0005515
Lele18g0526 1241 SMART arm_5 407 451 IPR000225 GO:0005515
Lele18g0526 1241 SMART arm_5 327 367 IPR000225 GO:0005515
Lele18g0526 1241 SMART arm_5 286 326 IPR000225 GO:0005515
Lele18g0526 1241 MobiDBLite consensus disorder prediction 1 25 - -
Lele18g0526 1241 FunFam RING-type E3 ubiquitin transferase 214 491 - -
Lele18g0526 1241 MobiDBLite consensus disorder prediction 679 699 - -
Lele18g0526 1241 CDD RING-Ubox 32 68 - -
Lele18g0526 1241 ProSiteProfiles U-box domain profile. 26 100 IPR003613 GO:0004842|GO:0016567
Lele18g0526 1241 SUPERFAMILY ARM repeat 218 489 IPR016024 -
Lele18g0526 1241 SMART Ubox_2 30 93 IPR003613 GO:0004842|GO:0016567
Lele18g0526 1241 PANTHER OS02G0177800 PROTEIN 674 1109 IPR012416 GO:0005516
Lele18g0526 1241 MobiDBLite consensus disorder prediction 678 699 - -
Lele18g0526 1241 Pfam Calmodulin binding protein C-terminal domain 991 1051 IPR046829 -
Lele18g0526 1241 Pfam Calmodulin binding protein central domain 920 985 IPR046830 -
Lele18g0526 1241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 101 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0526 Lele-ChrLele18 3099914 3108619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0526 1 505 U-box Gene Family AT5G65200 54.269 2.18e-167 507
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele18g0526 18 3099914 3108619 Lele19g0544 19 3154828 3156435 hybridization
Lele18g0526 18 3099914 3108619 Lele20g0906 20 15422450 15423064 hybridization