Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0513 ATGATTAATGCATCCAATCAATCGGGCCGCCGTATTCTGTCATTCCCGGCGGTTCATCCCTGTGAAGGCGTGTCTCCGGCCGCCCTTCTCACTTCTCTGATATCTCTTTCTCAGGCTATATGCAGTTTTCAATCCAAGTTCTTCCCAACCCAACATCGAAACTCCAGAGAAATAATTCGCCAACTCGGTATCATCCTCCTCTTCCTCGAGGAAATTCGAGACCGTGGAGTTCCGATAAGTGACTCTGTTGTTCTCTGCTTCTCCGAACTTCACCTGTGTCTCCAAAAAATTCACTTTTTACTCTCAGATTGTACTCGTGAAGGTGCTCGGCTATGGATGCTAATGAAATCGGAACAAGTCGCCACTCAATTCAGGGTTCTCATTCGCGCGTCGGCCACTGCTCTAGACGTTTTGCCTCTGAGTAGTATCGAGATTTGTGACGAAGTGAAAGAGGTGGTTGAATTAGTAGCCAAGCAAGCTCAGAAAGTGAAGCTTGAACTAGATCCACACGATGAACTCGCCACCAAGCAAGTCCTTTCAGTTTTGTATCAGTTCGAGAGAGGAATCGAACCCAACTTGAGTATCATGAAGCGAACCTTGAACTACTTGGGAATCAAAAGTTGGAATGATTGCAACAAAGAGATTAAATTCTTAGAAGATGAAGTCAACTTCTACTGCTCCGAAGGTGACGAGAGGGAGCTTCCTTTTCTGAGTAGTCTAGTTGGGTATTTATGTTATTGCAGGGTAGTGATAGTCAAAACTCTGGATTTTCAGCAAACCGCCGCCACTGATCCATCGGAGACAAGGTGTAGCACGGAGATGATTAACTTCATAAACCCACAAGACTTTCGATGTCCGATCTCTTTACAACTAATGACCGATCCTGTGACTGTATCAACTGGTCAAACGTACGATCGAGCATCGATTCAGAAATGGCTCAAAGCTGGAAACAGGACATGCCCGAAAACAGGAGAGAAGCTCACAAACACAGAGCTCGTCCCAAACACGACCCTCAGGAAGCTAATCCACCAGTTCTGTGCAGATCACGGAGTTTCCGCAGCTAAGTCCGGTCACCGGAGTCGTGACATAACGAGAACCATTGTCCCCGGTAGTACAGCTTCAGCACACGCCATGCAATTTCTTTCTTGGTTCATTGCCAGGAGGCTTGTGTTCGGAACAGATGAGCAGAAAAACAAATCAGCTTACGAAATTCGTGTGCTTGCAAGGTCCAACATTTTCAACAGAGCATGTTTGATTGAAGTTGGAACAGTTCCGTCATTACTCAATCTTTTAGACACGAACGATAAGTCAACGCAAGAGAACGCAATCTCTGCTCTTCTGAAGCTGGCAAAGCATACTAATGGACAGAACACTATAATGGAAAGCGAGGGATTAACAACAATTCCTATGGTTCTCAAGAATGGAATAACTCTGGAAGCTCGTCAAACCGCAGCTGCTATAATATTCTACCTTTCTTCCATGAGAGAGAACAGGAAAATAATCGGAGAAAATCCAGAAGCAATCCCAGCTTTGGTTGAACTAATCAAGGAAGAAACAACAACCTTGGGGAAAAAGAACGCCATAGTCGCCATTTTCGGTCTTCTCTTGCTTGCTCAGAATCATCAGAAAGTGCTTGAAGCCAATGCCGTTCCTGCGCTAGTTACCATCTTAGCTTCGTCGGAAAAATCCGACCTGACCACAGATTGTTTAGCGGTTCTTGCGGCGTTGGCGGAGAACGAGGAAGGGGCAAAAGCTGTGTCAAAAGCTTGTGCTTTGCCTGTGATCGTAGGGATGTTGCAGACGGTAACATGGAGAACAGGGAAAGAACACTGTGTGGCAATTTTGATGTCGCTGTGTTTGCATGTTGGAGAAGAGGGGGTGAGTGTTCTGGCGAAGGATCCTTCGTTGATGCCATGGCTGTACTCGCTGATCACCGACGGTACTTCTCATGCGGCCAAGAAAGCGCGTTCTCTGATCAAGGTTCTTCATGAATTCAATGACACTAGGACTTCTCAGTGGATTAGTTCGTCGGTGGTTCCACAGCGATCCCTTCACATTTGGTGA 2064 0.4617 MINASNQSGRRILSFPAVHPCEGVSPAALLTSLISLSQAICSFQSKFFPTQHRNSREIIRQLGIILLFLEEIRDRGVPISDSVVLCFSELHLCLQKIHFLLSDCTREGARLWMLMKSEQVATQFRVLIRASATALDVLPLSSIEICDEVKEVVELVAKQAQKVKLELDPHDELATKQVLSVLYQFERGIEPNLSIMKRTLNYLGIKSWNDCNKEIKFLEDEVNFYCSEGDERELPFLSSLVGYLCYCRVVIVKTLDFQQTAATDPSETRCSTEMINFINPQDFRCPISLQLMTDPVTVSTGQTYDRASIQKWLKAGNRTCPKTGEKLTNTELVPNTTLRKLIHQFCADHGVSAAKSGHRSRDITRTIVPGSTASAHAMQFLSWFIARRLVFGTDEQKNKSAYEIRVLARSNIFNRACLIEVGTVPSLLNLLDTNDKSTQENAISALLKLAKHTNGQNTIMESEGLTTIPMVLKNGITLEARQTAAAIIFYLSSMRENRKIIGENPEAIPALVELIKEETTTLGKKNAIVAIFGLLLLAQNHQKVLEANAVPALVTILASSEKSDLTTDCLAVLAALAENEEGAKAVSKACALPVIVGMLQTVTWRTGKEHCVAILMSLCLHVGEEGVSVLAKDPSLMPWLYSLITDGTSHAAKKARSLIKVLHEFNDTRTSQWISSSVVPQRSLHIW 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0513 687 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Lele18g0513 687 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Lele18g0513 687 CDD RING-Ubox_PUB 283 325 IPR045210 -
Lele18g0513 687 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Lele18g0513 687 SUPERFAMILY ARM repeat 395 663 IPR016024 -
Lele18g0513 687 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 422 464 IPR000225 GO:0005515
Lele18g0513 687 Gene3D - 385 529 IPR011989 -
Lele18g0513 687 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 548 591 IPR000225 GO:0005515
Lele18g0513 687 SMART arm_5 410 451 IPR000225 GO:0005515
Lele18g0513 687 SMART arm_5 537 578 IPR000225 GO:0005515
Lele18g0513 687 Pfam Armadillo/beta-catenin-like repeat 414 450 IPR000225 GO:0005515
Lele18g0513 687 Gene3D - 530 673 IPR011989 -
Lele18g0513 687 PANTHER U BOX DOMAIN-CONTAINING 78 662 - -
Lele18g0513 687 SUPERFAMILY RING/U-box 280 351 - -
Lele18g0513 687 FunFam RING-type E3 ubiquitin transferase 359 673 - -
Lele18g0513 687 FunFam RING-type E3 ubiquitin transferase 278 353 - -
Lele18g0513 687 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0513 Lele-ChrLele18 3035948 3038011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0513 1 687 U-box Gene Family AT1G60190 38.539 9.06e-167 493