Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0507 ATGAGCTTCGTTTGTTCATGTCGTTTCTTAGTGTATGTAGCCAAAGAAGTTGGAAATGACAAATTTGTCAGGGCTCAGGAGTCCGAGAGAGCTATTTGGAGAACTAAAGGCGTCGATTTTAAGTGGTACGATGGGTTTTTCTTGTCGATGCTTGCTACCAGCGTAGTTATTGTCGCGATTAATTGGAAGCGATATCATACCTGTACACACCCGTTGCACATATGGATTGTGGTTGACTACTCTACCGTGTTTATCTTTCGGTTGATGATGTTTGTTGATAATGGACTTTCTGCTGGAATGGGTTTAGACTTTGGGTGGCAGCAGAGATATGCTCGCTTCTGTGGAAGAGTAGTGGTCCTTTCAATCCTTGCTTTGCTTCTATATCCATTTCTTTGGGCTTGGACTATCATTGGTACCCTCTGGTTTGCTAGTTCCAGGAACTGCTTGCCTGAAGAGGGTCAGAAATGGGGCTTCCTCATCTGGTTACTTTTCAGCTACTGTGCACTGCTTTGCGTTGCTTGCATGTCATTAGGCAAGTGGTTGACCCGAAGACAAGCACATTTGTTACGTGCTCAGCAGGGTATTCCTGTCTCTGAATATGGAGTTCTGGTGGACATGATCCGAGTGCCTGATTGGGCATTTGAAGCTGCTGGTCAGGAAACAAGAGGTATGGGCCAAGATGCTGGTGCATATCATCCTGGACTTTACCTAACCCCAGCTCAGAGAGAAGCAGTTGAAGCTTTAATTCAGGAACTCCCAAAGTTCAGGTTGAAGGCTGTTCCAACTGACTGTAGTGAATGCCCCATCTGCTTAGAAGAATTCCACGAGGGGAATGAGGTTCGTGGCCTGCCTTGCGCTCATAATTTTCATGTTGAGTGTATTGATGAGTGGCTTCGCCTTAATGTAAAATGTCCTCGGTGCCGCTGTTCAGTATTTCCAAATCTTGACCTTAGTGCTCTGTCCAATCTCCGTCCTGAATCAGAACGATCTTCTGCCAGTGTTGTGACAACAACAAGATATGTGAGAGATCAACCTTCTAGTCAGAGTTATTTGTTGAGATTAGAGGGTCTTCTCCGTCCAGTGCGTTCAGAAATTGCGGGGCCGGGTGGTGAGGTGGGTAATACTTTGGAAAATGCAGAGAATGGTAGTGTGCCGGAAGTGACGCGAAATGCATCAATTGGACACCAAAGCCCTTCAGTTGAATGCATGCCTGTCAGTCTCTCCTCTGTACAGAACTAG 1239 0.4609 MSFVCSCRFLVYVAKEVGNDKFVRAQESERAIWRTKGVDFKWYDGFFLSMLATSVVIVAINWKRYHTCTHPLHIWIVVDYSTVFIFRLMMFVDNGLSAGMGLDFGWQQRYARFCGRVVVLSILALLLYPFLWAWTIIGTLWFASSRNCLPEEGQKWGFLIWLLFSYCALLCVACMSLGKWLTRRQAHLLRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRGMGQDAGAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHEGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRPESERSSASVVTTTRYVRDQPSSQSYLLRLEGLLRPVRSEIAGPGGEVGNTLENAENGSVPEVTRNASIGHQSPSVECMPVSLSSVQN 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0507 412 CDD RING-H2_RNF111_like 266 310 - -
Lele18g0507 412 Pfam Ring finger domain 266 308 IPR001841 -
Lele18g0507 412 ProSiteProfiles Zinc finger RING-type profile. 267 308 IPR001841 -
Lele18g0507 412 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 35 391 IPR044793 GO:0004842|GO:0010182
Lele18g0507 412 SMART ring_2 267 307 IPR001841 -
Lele18g0507 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 313 IPR013083 -
Lele18g0507 412 FunFam E3 ubiquitin-protein ligase SIS3 235 313 - -
Lele18g0507 412 SUPERFAMILY RING/U-box 249 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0507 Lele-ChrLele18 3011652 3017092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0507 90 392 C3H Transcription Factor Family AT3G47990 72.876 3.47e-159 449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1798 21 25637754 25639802 Lele18g0507 18 3011652 3017092 CCT
Lele22g1774 22 22956517 22958565 Lele18g0507 18 3011652 3017092 CCT
Lele23g0210 23 1390084 1392132 Lele18g0507 18 3011652 3017092 CCT
Lele24g1735 24 22603580 22605628 Lele18g0507 18 3011652 3017092 CCT
Lele18g0507 18 3011652 3017092 Lele19g0528 19 3069518 3074390 hybridization
Lele18g0507 18 3011652 3017092 Lele20g0926 20 15513938 15517925 hybridization