Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0503 ATGATCGTGACCCTCCGTCTGTCTGACCGACCTCTTTTCCAACTTCGACCACAGTGGCCAAGTGACCCTAAAGAGGATCCATTTGTCTTTTTACTTATCCACAGGGACACAATCGTCCTTAAATATGCTACTAACTATTCGGTTGTGAGCTCATTGCCATGGCTGGTTATTAAGATTAGCTGTTTGATATTGGTTCTCCCTGTGAATTTGGTTTCTGAAGAAGTAAAGATGCCAGGAATCCTTACAAATGGATTTGAACATAATGAAAGAGCAAATGAAATGAACGGAAATCATTCACCTTGTAAGGAAACTGCTACTCCAATCAAGCCCCAAAGGAGTTCCGTTAGTCCACAAAGTCCTCACAACACAGGTCCAAATGCACCTGATCTACCTGTTGACACCTCAATCGAGCAGCTCTATGAAAATGTCTGTGACATGGAAAGTTCTGATCACTCACCTTCCAGACATAGTCTCGGATCTGATGGCGATGAGTCTGGGATCGATTCAGAATTATGCCATCTAGTTGGAGGACCGATGAGCGAAGTGGAAATAATGGAAGAGGAAGTGGCAGAGAGGTCCAGAGGTGATTCCGTTAGTGAAACATCGTCTGGAAAAGAAACATCAGAGAATTGTGGGAAGTTGGCATCGGCGGAGGATGAGAAGATTCAATGTGAGATGTTGGTACAGGCGGATGAGAAGATTCAATCTGCTAGTACAAGGTCTGCTTCTTCAGAAACTTCAAACAAAGTGTCAAACTCACAGGTGGACCTTATCCCTAAAACACCGCCAAAGTCGAAACCCAAGGGAAAAAGTCCTCCCACAAAGCCTCCTACTGATAAGAGGAATGATAAACCTCTGAGAAAACAAAATAATGGAGCTACTCGTGTGAAAAAATCAAAGAATTCTCCTAATAGAAGGCTAATGTCACAAAATCAGAGCAAGAATTCCACTGAGTCTACATCAGACAAGCCAGAGATGGGGCCAGTTTTACTAAAGCAAGCAAGAGATTTGATTTCATCAGGAGATAATCCAAGGGTGGCTCTTGAATTAGCTCTTCGAGCAATGAGATTGTTTGAGAAGTGTGCTGATGGAAAACCAAGTTTGGAACTGGTTATGTGCCTGCATGTTACTGCGGCAATATATTCCAGCTTGGGCCAATACCATGAGGCAATCCCACTTCTTGAGCGCTCCATTGAAATTCCTCTCATTGAGGAAGGGCAAGATCATGCCCTTGCTAAGTTTGCTGGTCACATGCAATTAGGTGACACCTATGCAATGTTGGGCCAGCCTGAAAACTCAATTATGTGCTATAAGACAGGGTTAGAGGTCCAGAGGAAAGTCTTAGGAGAAACAGACCCAAGATTTGGCGAGACTTGTAGGTATGTGGCTGAAGCACACGTTCAAGCGTTGCAATTCGACGAAGCTGAGCGGCTCTGCCAAATGGCTCTTGACATTCATAGAGCAAATGGTTCACCCCCTACTCTTGAAGAGGTGGCTGATAGGAGGCTCATGGGCCTCATATATGAAACAAAAGGAAACCATGAAGCAGCTCTTGAGCATCTAATTTTAGCCAGCATGGCAATGGTAGCTAATGGCCAGGAAGTGGAAGTGGCATCCGTTGACAGCAGCATTGGTGACACATACTTATCTTTGTCTCGGTACGATGAAGCTATTTTTGCTTATCAGAAAGCACTAACAGTTTTTAAGACCAGCAAAGGAGAGAATCATCCAGCCGTAGGATCAATCTTCGTACGTATGGCTGACTTGTATAACAGGACAGGGAAGATAAGGGAATCAAAATCTTACTGTGAGAGTGCACTTAGAATCTATGAGAAACCTATGCCTGGGGTCCCTCCTGAGGAGATTGCAAGTGGTCTTATGGATATCTCAGGTATCTATGAGTCAATGAATGAGCTTGATCAGGCACTCAAGTTACTTCCCAAGGCATTGGAGATATATAAGGACGCCCCTGGTCGGCAAAGCACAGTAGCAGGAATTGAAGCTCAGATGGGAGTCATGCACTACATGTTGGGAAACTATTCGGAATCTTACAACACTTTAAAGAATGCTATCTCAAAGCTTCGTGCTACCGGAGAGAAGAAATCAGCTTTCTTCGCCGTCGCTCTTAATCAAATGGGACTTGCTTGCGTTCAGCGCTATGCATTGGGTGAGGCAACAGAGCTGTTTGAAGAAGCAAAGAATATATTGGAACAAGAATATGGACCCTATCACCATGAAACGCTTGGGGTGTATAGCAATCTTGCTGGCACTTATGATGCAATAGGCAGGGTGGATGAGGCAATTCAAATTCTGGAGTATGTAGTTGGAATGAGAGAGGAAAAACTTGGGACAGCGAATCCTGATGTGGATGATGAGAAAAGAAGGCTGAGTGAATTGTTGAAGGAAGCTGGCAGAGTTAGGAGCAGAACAGCCATATCACTTGAGACCCTTCTTGATGCCAACAATGCTCCTTCTAAAAACAGTAATCCACAAGGGGAGGCTATCTAG 2508 0.443 MIVTLRLSDRPLFQLRPQWPSDPKEDPFVFLLIHRDTIVLKYATNYSVVSSLPWLVIKISCLILVLPVNLVSEEVKMPGILTNGFEHNERANEMNGNHSPCKETATPIKPQRSSVSPQSPHNTGPNAPDLPVDTSIEQLYENVCDMESSDHSPSRHSLGSDGDESGIDSELCHLVGGPMSEVEIMEEEVAERSRGDSVSETSSGKETSENCGKLASAEDEKIQCEMLVQADEKIQSASTRSASSETSNKVSNSQVDLIPKTPPKSKPKGKSPPTKPPTDKRNDKPLRKQNNGATRVKKSKNSPNRRLMSQNQSKNSTESTSDKPEMGPVLLKQARDLISSGDNPRVALELALRAMRLFEKCADGKPSLELVMCLHVTAAIYSSLGQYHEAIPLLERSIEIPLIEEGQDHALAKFAGHMQLGDTYAMLGQPENSIMCYKTGLEVQRKVLGETDPRFGETCRYVAEAHVQALQFDEAERLCQMALDIHRANGSPPTLEEVADRRLMGLIYETKGNHEAALEHLILASMAMVANGQEVEVASVDSSIGDTYLSLSRYDEAIFAYQKALTVFKTSKGENHPAVGSIFVRMADLYNRTGKIRESKSYCESALRIYEKPMPGVPPEEIASGLMDISGIYESMNELDQALKLLPKALEIYKDAPGRQSTVAGIEAQMGVMHYMLGNYSESYNTLKNAISKLRATGEKKSAFFAVALNQMGLACVQRYALGEATELFEEAKNILEQEYGPYHHETLGVYSNLAGTYDAIGRVDEAIQILEYVVGMREEKLGTANPDVDDEKRRLSELLKEAGRVRSRTAISLETLLDANNAPSKNSNPQGEAI 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0503 835 ProSiteProfiles TPR repeat profile. 623 656 IPR019734 GO:0005515
Lele18g0503 835 SMART tpr_5 748 781 IPR019734 GO:0005515
Lele18g0503 835 SMART tpr_5 538 571 IPR019734 GO:0005515
Lele18g0503 835 SMART tpr_5 706 739 IPR019734 GO:0005515
Lele18g0503 835 SMART tpr_5 414 447 IPR019734 GO:0005515
Lele18g0503 835 SMART tpr_5 371 404 IPR019734 GO:0005515
Lele18g0503 835 SMART tpr_5 664 697 IPR019734 GO:0005515
Lele18g0503 835 SMART tpr_5 623 656 IPR019734 GO:0005515
Lele18g0503 835 SMART tpr_5 498 531 IPR019734 GO:0005515
Lele18g0503 835 SMART tpr_5 580 613 IPR019734 GO:0005515
Lele18g0503 835 SMART tpr_5 456 489 IPR019734 GO:0005515
Lele18g0503 835 SUPERFAMILY TPR-like 663 805 IPR011990 GO:0005515
Lele18g0503 835 MobiDBLite consensus disorder prediction 90 129 - -
Lele18g0503 835 Pfam Tetratricopeptide repeat 378 401 IPR019734 GO:0005515
Lele18g0503 835 SUPERFAMILY HCP-like 508 652 - -
Lele18g0503 835 Gene3D Tetratricopeptide repeat domain 321 519 IPR011990 GO:0005515
Lele18g0503 835 MobiDBLite consensus disorder prediction 187 215 - -
Lele18g0503 835 MobiDBLite consensus disorder prediction 145 172 - -
Lele18g0503 835 MobiDBLite consensus disorder prediction 90 132 - -
Lele18g0503 835 Pfam Tetratricopeptide repeat 537 612 - -
Lele18g0503 835 Pfam Tetratricopeptide repeat 706 774 - -
Lele18g0503 835 Gene3D Tetratricopeptide repeat domain 521 702 IPR011990 GO:0005515
Lele18g0503 835 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 127 821 - -
Lele18g0503 835 MobiDBLite consensus disorder prediction 273 290 - -
Lele18g0503 835 Gene3D Tetratricopeptide repeat domain 703 814 IPR011990 GO:0005515
Lele18g0503 835 SUPERFAMILY TPR-like 372 692 IPR011990 GO:0005515
Lele18g0503 835 MobiDBLite consensus disorder prediction 235 259 - -
Lele18g0503 835 MobiDBLite consensus disorder prediction 303 323 - -
Lele18g0503 835 Coils Coil 789 809 - -
Lele18g0503 835 MobiDBLite consensus disorder prediction 148 168 - -
Lele18g0503 835 ProSiteProfiles TPR repeat profile. 538 571 IPR019734 GO:0005515
Lele18g0503 835 MobiDBLite consensus disorder prediction 235 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0503 Lele-ChrLele18 2985795 2989542 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1795 21 25607738 25610587 Lele18g0503 18 2985795 2989542 CCT
Lele23g0213 23 1427161 1428873 Lele18g0503 18 2985795 2989542 CCT
Lele24g1731 24 22577726 22582017 Lele18g0503 18 2985795 2989542 CCT
Lele18g0503 18 2985795 2989542 Lele19g0526 19 3045137 3053578 hybridization
Lele18g0503 18 2985795 2989542 Lele20g0931 20 15541531 15544756 hybridization