Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0502 ATGGAAGGTGGTGAACATGAATATAAGAAGGGGCTGTGGAATTCTCAGGAAGACAAGATCTTAATAGAGTACGTGAAGCAGAATGGAGTAGGCAAGTGGAACCGTATCGCTAAAGTCACAGGATTGAAGAGATGTGGCAAAAGTTGCAGACTGAGGTGGATGAACTACCTGAGCCCGAATGTGAAGCGTGGAGAATTCTCAGAAGAAGAAGACGACCTCATTATTCGCCTCCACAATCTCCTTGGAAATAGGTGGTCATTGATAGCAGGGAGGGTGCCAGGGAGGACAGACAACCAAGTGAAGAATTACTGGAACACTCATTTGAGCAAAAAGTTGGGTGTTAACAAAAAGGTAAAGACCAAAGTGTGTCGATCTCCGAAGTCACCCTCTACTGAATTTAAGCACGTCGCTTCTAACAATGGGTCAAAACCTGATAATGGAGCTTCAAACTGTAGCCAAGAGAGTGAGATTGAGAAGTTCCTCCAAGATAATTCTTTAAGCAAGGAGGATTTCACTCGCATGCAAAAGATCATTATGAGTGATGTTGATTTTGAGACCAACTTCTTGTCTGCTAACAATGGAATTGGCCTTTATGATCCTTCCTCCTTCACTAAGCCTTTACAAGACTACTTTGTTGACCTTGATTGGCCTGCCTTGTAA 660 0.4318 MEGGEHEYKKGLWNSQEDKILIEYVKQNGVGKWNRIAKVTGLKRCGKSCRLRWMNYLSPNVKRGEFSEEEDDLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNYWNTHLSKKLGVNKKVKTKVCRSPKSPSTEFKHVASNNGSKPDNGASNCSQESEIEKFLQDNSLSKEDFTRMQKIIMSDVDFETNFLSANNGIGLYDPSSFTKPLQDYFVDLDWPAL 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0502 219 SMART sant 62 110 IPR001005 -
Lele18g0502 219 SMART sant 9 59 IPR001005 -
Lele18g0502 219 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Lele18g0502 219 FunFam MYB-related transcription factor 9 62 - -
Lele18g0502 219 SUPERFAMILY Homeodomain-like 8 104 IPR009057 -
Lele18g0502 219 Pfam Myb-like DNA-binding domain 10 57 IPR001005 -
Lele18g0502 219 Pfam Myb-like DNA-binding domain 63 108 IPR001005 -
Lele18g0502 219 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Lele18g0502 219 CDD SANT 13 57 IPR001005 -
Lele18g0502 219 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Lele18g0502 219 MobiDBLite consensus disorder prediction 124 153 - -
Lele18g0502 219 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 7 157 - -
Lele18g0502 219 FunFam Transcription factor WER 64 136 - -
Lele18g0502 219 Gene3D - 10 62 - -
Lele18g0502 219 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 57 IPR017930 -
Lele18g0502 219 Gene3D - 64 135 - -
Lele18g0502 219 CDD SANT 65 108 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0502 Lele-ChrLele18 2979942 2980853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0502 2 152 MYB Transcription Factor Family AT5G40330 63.158 4.10e-66 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele18g0502 Myb_DNA-binding 1e-14 CL0123