Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0489 ATGCAGAGCTCAGCCTTCACTCTCTCCCCTTCTCTTCCTCTTCTCAAGTCTCGTTCTCGCACTCCTCCTCGCTTCGATCCCATACGCCTCTCTGCTTCTTCCTCTTTCAAACCCAATGTCGCTTGCTCCTCCACTCCTTCCGCTCGCCGATCCTGGTCCCTTGCTTCTTCTTCATCATCCCCTTTTCCCTTCAGGCCCTGGACATCTTTCACCACCCTCTCTTCCTCCGATCACGATGGATCTCCTTTTGAGGCCAGGGCCACTTCCGTGCCTGAGAGCAGCAGTGAAGCATCCAATAATATGGCCAACACGTTGGTGCTCGGATCCTTGTTTGGTTTCTGGTACCTCTTCAATATCTACTTCAACATCTACAACAAGCAGGTCTTGAAGGCGTTCCATTTCCCAGTCACCATCACTGCAATTCAATTTGCTGTTGGGACTATACTTGTATTATTTATGTGGGGTTTCAATCTATATAAAAGGCCTAAAATCAGTGGTGCCCAGCTTGCTGCAATAGTTCCACTGGCTTTGGTACATACCTTAGGGAACCTTTTCACAAATATGAGTCTTGGAAAGGTAGCCGTGTCTTTCACTCACACAATCAAAGCAATGGAGCCCTTCTTCTCAGTGATCCTTTCTGCTATGTTCCTTGGAGAGTTCCCTACACCTTGGATAGTTGCTTCCCTAATGCCCATTGTTGGTGGAGTGGCACTTGCATCAGTTACTGAGGCCTCCTTCAATTGGGCTGGATTCTGGAGTGCAATGGCATCTAATTTGACAAATCAGTCTCGCAACGTTCTCAGCAAAAGAGTCATGGTTAAGAAAGATGATTCTATGGACAATATAACGCTATTCTCAATAATAACTGTTATGTCCTTCTTCATGTTAGCCCCAGTGGCTGTATTCATGGAGGGTGTTAAAGTTACTCCTGCTTATCTGCAATCTGCGGGGTTGAATGTGAAACAAATATACATCAGATCACTTCTTGCTGCACTGTGTTTCCATGCATATCAGCAGGTTTCTTACATGATATTACAAAGGGTGTCACCTGTTACCCACTCTGTGGGTAATTGTGTCAAGCGGGTTGTGGTCATTGTGAGCTCTGTCATCGTCTTCCAAACACCTGTTTCACCCGTTAACGCTTTTGGGACTGCCATTGCTCTTGCCGGCGTTTTCCTCTATTCAAGGGTGAAGCGAATTAAGCCAAAGGCCAAGACAGCCTGGCTCTTACCCTCAATATTAATTTCTGTTACTGTTTCTGCCACGGATCTTCACACAAATCTCAGAGATAACTCTTACATCACCTCATCCCAGCCAATAATGCATCTTCAAGAAACTTACCAGCTGAGGCCTAATATGAGGAAATTAGATGAATCTCCTTTTGGAGTTCCTCATTCAGCATCACCAGAGGGTTTCTTGCAAGATTTTAATTACCACGTTGATCATCATAATCATCAACTTAATGGGTCTTCTTCATTATCCAAGCCATCATCATCAGCTTTTGGGATCCCTACTCTGATGAGTTTTGATTCTTTTGATGATTTTGATGTTTATGAGTGCAAGCCTTTTGTTGATGAGATCAATAATAATGCTCATCATCAGGTTTTGGATAATTTCCAATATGGATCAGCTAATTGTAGCTTGAACGTCGTTCCTCAGAGGAATCAAGTCAACAACATGAACCAAACCAATGCAATGCCTTTCAATAATTCTGAGGAAATTATAAAGCCTGTGAATTTTGTTGTGCCAGATGAACTCTCGTGCATATCCCCTTCGGTTAATTACTGCAGAAAAGTTGGCTTCAATAAGAAAAGTAATAGGGTTTCATCATCATCTCTAACCGCTAGAAGGACGAGTTACAGACTTCGCAAGAAATCCAACCCTGTAAAGGGCCAATGGACCATAGAAGAAGATAGGTTGCTGATTCAATTGGTGGAACAATATGGAGTGAGAAAGTGGTCTCATATTGCTCAGATGTTGCCAGGAAGAATAGGCAAACAGTGCAGAGAGAGATGGCATAATCATCTAAGACCTGACATTAAGAAGGAGACATGGACGGAAGAAGAAGACAAGATACTGATAGAAGCTCATGGAGAGATAGGGAACAAATGGGCAGAGATAGCAAAGAGATTGCCTGGAAGAACAGAAAATTCCATAAAGAACCATTGGAATGCGACAAAGAGAAGACAATATTCAAAGAGAAAATGTCGCTCAAAGCACCCAAGACCCTCTCTTCTACAAGAATACATCAAAAGCTTGAACTTAGACCAAATCCCTCCATTAGACTATCGCAAAAGATCATCATCACCATCATCTGCTGCTGCTGCTAATTACACTTCTGCCACAATCGTAATCGAACCTGAAGCATTATCTCAGTCTCAGTTAATAAATCGATTGGTGCCGAATAATTATGGGTTTAAGGAGGCCGAAGAGTTTTGCTTTAACGAGAGCTTGCTTCGAGAAGAAGGTGGCTGCGACAATCTTGATTCTGTGCTAAATGATGATGACGATGATGACAAGTTTGAAAAGAAGAAGGAGCTGGATTTGGTGGAGATGATGTCTCAGGTCAATCAAGCTATTATTGATATGCAAAGTCAACCTTAA 2604 0.4293 MQSSAFTLSPSLPLLKSRSRTPPRFDPIRLSASSSFKPNVACSSTPSARRSWSLASSSSSPFPFRPWTSFTTLSSSDHDGSPFEARATSVPESSSEASNNMANTLVLGSLFGFWYLFNIYFNIYNKQVLKAFHFPVTITAIQFAVGTILVLFMWGFNLYKRPKISGAQLAAIVPLALVHTLGNLFTNMSLGKVAVSFTHTIKAMEPFFSVILSAMFLGEFPTPWIVASLMPIVGGVALASVTEASFNWAGFWSAMASNLTNQSRNVLSKRVMVKKDDSMDNITLFSIITVMSFFMLAPVAVFMEGVKVTPAYLQSAGLNVKQIYIRSLLAALCFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVIVFQTPVSPVNAFGTAIALAGVFLYSRVKRIKPKAKTAWLLPSILISVTVSATDLHTNLRDNSYITSSQPIMHLQETYQLRPNMRKLDESPFGVPHSASPEGFLQDFNYHVDHHNHQLNGSSSLSKPSSSAFGIPTLMSFDSFDDFDVYECKPFVDEINNNAHHQVLDNFQYGSANCSLNVVPQRNQVNNMNQTNAMPFNNSEEIIKPVNFVVPDELSCISPSVNYCRKVGFNKKSNRVSSSSLTARRTSYRLRKKSNPVKGQWTIEEDRLLIQLVEQYGVRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKETWTEEEDKILIEAHGEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKHPRPSLLQEYIKSLNLDQIPPLDYRKRSSSPSSAAAANYTSATIVIEPEALSQSQLINRLVPNNYGFKEAEEFCFNESLLREEGGCDNLDSVLNDDDDDDKFEKKKELDLVEMMSQVNQAIIDMQSQP 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0489 867 Gene3D - 629 681 - -
Lele18g0489 867 CDD SANT 684 727 IPR001005 -
Lele18g0489 867 Gene3D - 683 748 - -
Lele18g0489 867 FunFam Transcription factor MYB119 683 747 - -
Lele18g0489 867 SUPERFAMILY Multidrug resistance efflux transporter EmrE 150 241 - -
Lele18g0489 867 SUPERFAMILY Multidrug resistance efflux transporter EmrE 319 399 - -
Lele18g0489 867 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 681 731 IPR017930 -
Lele18g0489 867 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 105 405 IPR004696 GO:0016020|GO:0022857|GO:0055085
Lele18g0489 867 FunFam Transcriptional activator Myb isoform A 629 682 - -
Lele18g0489 867 SMART sant 681 729 IPR001005 -
Lele18g0489 867 SMART sant 629 678 IPR001005 -
Lele18g0489 867 ProSiteProfiles Myb-like domain profile. 677 727 IPR001005 -
Lele18g0489 867 PANTHER SOLUTE CARRIER FAMILY 35 107 401 - -
Lele18g0489 867 Pfam Myb-like DNA-binding domain 630 676 IPR001005 -
Lele18g0489 867 Pfam Myb-like DNA-binding domain 682 724 IPR001005 -
Lele18g0489 867 CDD SANT 633 676 IPR001005 -
Lele18g0489 867 MobiDBLite consensus disorder prediction 75 96 - -
Lele18g0489 867 ProSiteProfiles Myb-like domain profile. 625 676 IPR001005 -
Lele18g0489 867 SUPERFAMILY Homeodomain-like 629 723 IPR009057 -
Lele18g0489 867 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 625 680 IPR017930 -
Lele18g0489 867 Pfam Triose-phosphate Transporter family 106 395 IPR004853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0489 Lele-ChrLele18 2886419 2892563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0489 1 407 Antiporters AT5G33320 72.464 0.0 556
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele18g0489 TPT 1.2e-123 CL0184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele18g0489 18 2886419 2892563 Lele19g0509 19 2914467 2916124 hybridization
Lele18g0489 18 2886419 2892563 Lele20g0946 20 15615441 15617152 hybridization