Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0473 ATGCCTGTGAACCCATGGACCATCTTCTTCCTCTGCTTTTCTCTTTCACTTCTTCATCATTCTTTTATAGCTTTTGCAGTGAACTCGCAAGGAGAAGCTCTCCTTTCATGGAAGAGAACACTCAAGGGATCCCTTGAGGTGTTGAGCAATTGGAATCCAAATGTCAGTACACCTTGTGGCTGGTTTGGAGTTAACTGTAACTCCAACAACGAGGTTGTGAAATTAGACCTGAGGTATGTGGATTTGGTTGGGACACTTCCTTCTAATTTCACCTCACTGCTTTCTCTGAGCGAGCTAGTCTTAATGGGAACGAACCTAACTGGTTCAATTCCGAAAGAAATAGGCACTCTTGGCAAGCTCGACTACTTGGACTTGAGCGACAATGCATTGACAGGTGAAATCCCAAGTGAACTTTTCTTCTTGACAAAGCTTGAGCAACTCCATCTGAACTCAAACCAGCTCGTGGGTTCGATTCCGAATGCAATCGGGAACCTCACAGAGTTGAAGTGGCTGGTTTTATATGACAATCAACTACGTGGTGAAATTCCCAGAACCATTGGTAACTTGGGGAAGCTGCAAGTGATCAGAGCTGGAGGAAACCAGAACCTTCAAGGCTTCTTGCCACACGAAATTGGCAACTGTACCAATTTGGTCATGTTGGGTTTGGCTGAAACTAGTCTCTCAGGTTCTCTTCCTCCAACTCTTGGCCTTCTTAAGAAGCTTGATACTTTTGCAATTTACACTTCACTTCTCTCTGGTCAAATTCCTCCCGAACTCGGTGATTGCGATGAGCTTCAGAATATTTATCTGTACGAGAATTCCCTCTCAGGATCCATACCAAGTAGACTGGGAAATCTTAGAAACCTCAAGAATCTTCTACTATGGCAAAACAATCTAATTGGCACCATCCCACCAGAGATTGGAAATTGCTACCAGTTAGCCGTCATTGACATTTCGATGAACTCACTTGTCGGAAGCATTCCCAAAAGTTTTGGAAATTTGACGTTGCTCGAGGAACTTCAACTCAGCGTCAATCATATTTCGGGTCAGATTCCAACAGAGTTGGGAAACTGTCAGCTACTCAATCACATTGAGCTGGACAACAATCTAATCACGGGTACAATACCTTCTGAGTTTGGGAACCTTGGGAATCTAACTTTATTGTTCTTGTGGCATAACAATGTGGAAGGAACTATACCATCTTCGCTTTCGAGTTGTCAAAATCTGGAAGCAGTTGATCTGTCACAGAATGGATTGACGGGTTCCATACCCAAGGGGATATTCCTGCTCAAGAATCTGAACAAGCTTTTACTACTCTCTAACAATCTCTCCGGGAATATACCCGCTGAGATTGGGAACTGTACGTCTCTGATTCGGTTCCGAGCCAGCAACAACAAAATCACAGGGAACATTCCATCAAATATTGGAAACCTGAAGAACTTGAATTTCTTGGACCTTGCAAGTAATCGCATTTCAGGAGTTATTCCAGAAGAGTTCTCAGGCAGCTGGAATCTCGCATTTCTGGACCTCCATTCCAACTTGATATCAGGAAGCTTGCCGGAAAGTCTCAGCCAGCTAGGCTCGCTCCAATTTATTGATGTCTCCGATAACATGATTGAAGGTAAACTAAGCCCAAGCCTCGGGAAGCTTGGCGAACTCACCAAATTCATTCTCAGAAAAAATCATATCACCGGGTCAATTCCGAGTGAATTTGGTTCTTGTGCGAAGCTGCAATTATTGGACCTCAGTTGCAATGAACTCTCAGGTAAAATCCCAGGTAGTCTGGGTAACATTCCGGCGCTCGAAATCGCAATGAACCTCAGCTGGAATCATCTCTGTGGCGAGATCCCCAGGGAGTTTTCTGCATTGAGCAAACTTGGAATTTTGGACATATCGCACAACAAGCTCATCGGTAGCCTTCAGTATCTCGAGGTCCTCCAAAATCTCGTAGTCCTCAACATCTCATACAACAATCTCTCGGGTCGCGTGCCCAACAAGCTGTTCTTCTCGAAGCTTCCTCTCGGCGTCCTCGAAGGGAACCCATCGCTCTGCTTTCCCGGCAATCGATGCCCCGTAGACACTTCCAGACGATCAATTCGACGGACAAAGGCGGCGCGTGTAGCCATGGTGGTCCTTCTGTGTACCGCGTGTTTACTTTTCCTCACAGCCTTGTACGTCGTCCTTGCAGCAAAAAGAAGTGGGCTACCGGAGGACGGTCTGGACCTCAACGGTGGGGATAGCGACGTGGAGATGGGCCCACCTTGGGAGGTGACCCTCTATCAGAAGCTAGACTTGTCAATCTATGACGTGGCGAGATGCCTGACAGTTGGTAACATAATCGGCCGCGGACGATCTGGCGTTGTTTATAGAGTAGATCTCCCGTCTGGATTAACTATCGCCGTGAAAAGATACAGATTATCGGAGAAATTCTCAGCCTCTGCATTCTCATCAGAGATCGCCACGCTAGCAAGAATCCGGCACCGGAATATTGTACGGCTATTGGGTTGGGCGGCGAACGGAAAAACGAAACTACTGTTGTATGATTATTTACCCAATGGTAATTTAGATGCACTCTTGCATGAGGGCTGCACAGGATTAGTCGAGTGGGAGACACGGTTCAAGATAGCATTGGGCGTGGCCGAAGGGTTGGCTTATCTACACCATGGCTGCGTGCAGGCGATCTTGCACCGGGACGTCAAGGCTCATAACATTCTGTTGGCAGACACATACGAACCATGTTTGGCAGATTTTGGATTTGCAAGATTGGTGGACGACGATCACGGACCGTTTTCCGTCAATCCACAGTTCGCGGGTTCTTATGGCTACATTGCACCAGAATATGGATGCATGGTGAGAATAAGAGAGAAGAGCGACGTGTACAGCTTCGGAGTGGTACTGCTGGAGATAATAACGGGGAAAAGACCCCTGGACGCATCGTTCGCGGAGGATGAGGGAGAGCACGTGATAGGGTGGGTGAGACAGAAGCTGAAGAGCAAGGCGGACCCATTGGAGATTGTTGATTCTAAGTTGCGAGGCCTTCCAGGCACTCAAATCCAAGAGATGCTTCAGGCTCTTGGCATCGCTCTCTTGTGCACCAGCCTGCGTCCAGAGGATCGCCCCACCATGAAGGACGTTGCCGGATTATTGACAGAGATCAAACACGATCCTCCCCTCCCTGATCACCCCCACAAGCCACCCCCGAAAACGACCCCTCATCCCTCGTCGTTTTCCTCCTCCTCCGCCTTGTCGCGCCTCCCGTCCTTTTCTCATTCTTCCACCTGCTTCCCCGCTTATTCTTCTTCTTCTCTTGCCGTTTACCCCCCCACCTGA 3330 0.4787 MPVNPWTIFFLCFSLSLLHHSFIAFAVNSQGEALLSWKRTLKGSLEVLSNWNPNVSTPCGWFGVNCNSNNEVVKLDLRYVDLVGTLPSNFTSLLSLSELVLMGTNLTGSIPKEIGTLGKLDYLDLSDNALTGEIPSELFFLTKLEQLHLNSNQLVGSIPNAIGNLTELKWLVLYDNQLRGEIPRTIGNLGKLQVIRAGGNQNLQGFLPHEIGNCTNLVMLGLAETSLSGSLPPTLGLLKKLDTFAIYTSLLSGQIPPELGDCDELQNIYLYENSLSGSIPSRLGNLRNLKNLLLWQNNLIGTIPPEIGNCYQLAVIDISMNSLVGSIPKSFGNLTLLEELQLSVNHISGQIPTELGNCQLLNHIELDNNLITGTIPSEFGNLGNLTLLFLWHNNVEGTIPSSLSSCQNLEAVDLSQNGLTGSIPKGIFLLKNLNKLLLLSNNLSGNIPAEIGNCTSLIRFRASNNKITGNIPSNIGNLKNLNFLDLASNRISGVIPEEFSGSWNLAFLDLHSNLISGSLPESLSQLGSLQFIDVSDNMIEGKLSPSLGKLGELTKFILRKNHITGSIPSEFGSCAKLQLLDLSCNELSGKIPGSLGNIPALEIAMNLSWNHLCGEIPREFSALSKLGILDISHNKLIGSLQYLEVLQNLVVLNISYNNLSGRVPNKLFFSKLPLGVLEGNPSLCFPGNRCPVDTSRRSIRRTKAARVAMVVLLCTACLLFLTALYVVLAAKRSGLPEDGLDLNGGDSDVEMGPPWEVTLYQKLDLSIYDVARCLTVGNIIGRGRSGVVYRVDLPSGLTIAVKRYRLSEKFSASAFSSEIATLARIRHRNIVRLLGWAANGKTKLLLYDYLPNGNLDALLHEGCTGLVEWETRFKIALGVAEGLAYLHHGCVQAILHRDVKAHNILLADTYEPCLADFGFARLVDDDHGPFSVNPQFAGSYGYIAPEYGCMVRIREKSDVYSFGVVLLEIITGKRPLDASFAEDEGEHVIGWVRQKLKSKADPLEIVDSKLRGLPGTQIQEMLQALGIALLCTSLRPEDRPTMKDVAGLLTEIKHDPPLPDHPHKPPPKTTPHPSSFSSSSALSRLPSFSHSSTCFPAYSSSSLAVYPPT 1109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0473 1109 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 27 200 - -
Lele18g0473 1109 Gene3D Ribonuclease Inhibitor 604 693 IPR032675 -
Lele18g0473 1109 Gene3D Ribonuclease Inhibitor 362 603 IPR032675 -
Lele18g0473 1109 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Lele18g0473 1109 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 201 424 - -
Lele18g0473 1109 SMART serkin_6 774 1058 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele18g0473 1109 Gene3D Ribonuclease Inhibitor 27 181 IPR032675 -
Lele18g0473 1109 ProSitePatterns Serine/Threonine protein kinases active-site signature. 894 906 IPR008271 GO:0004672|GO:0006468
Lele18g0473 1109 ProSiteProfiles Protein kinase domain profile. 774 1058 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele18g0473 1109 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 850 1063 - -
Lele18g0473 1109 SUPERFAMILY RNI-like 316 668 - -
Lele18g0473 1109 SMART LRR_typ_2 334 358 IPR003591 -
Lele18g0473 1109 SMART LRR_typ_2 478 501 IPR003591 -
Lele18g0473 1109 SMART LRR_typ_2 286 310 IPR003591 -
Lele18g0473 1109 SMART LRR_typ_2 550 574 IPR003591 -
Lele18g0473 1109 SMART LRR_typ_2 165 189 IPR003591 -
Lele18g0473 1109 SMART LRR_typ_2 646 670 IPR003591 -
Lele18g0473 1109 SMART LRR_typ_2 382 406 IPR003591 -
Lele18g0473 1109 SMART LRR_typ_2 117 141 IPR003591 -
Lele18g0473 1109 Pfam Protein kinase domain 776 1045 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele18g0473 1109 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 479 1049 - -
Lele18g0473 1109 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 425 519 - -
Lele18g0473 1109 MobiDBLite consensus disorder prediction 1052 1067 - -
Lele18g0473 1109 ProSitePatterns Protein kinases ATP-binding region signature. 780 802 IPR017441 GO:0005524
Lele18g0473 1109 Gene3D Ribonuclease Inhibitor 283 361 IPR032675 -
Lele18g0473 1109 Gene3D Ribonuclease Inhibitor 182 282 IPR032675 -
Lele18g0473 1109 Gene3D Phosphorylase Kinase; domain 1 766 849 - -
Lele18g0473 1109 SUPERFAMILY Protein kinase-like (PK-like) 766 1088 IPR011009 -
Lele18g0473 1109 MobiDBLite consensus disorder prediction 1073 1109 - -
Lele18g0473 1109 MobiDBLite consensus disorder prediction 1052 1109 - -
Lele18g0473 1109 SUPERFAMILY RNI-like 74 396 - -
Lele18g0473 1109 FunFam Putative LRR receptor-like serine/threonine-protein kinase 605 689 - -
Lele18g0473 1109 Gene3D Transferase(Phosphotransferase) domain 1 850 1057 - -
Lele18g0473 1109 Pfam Leucine rich repeat 287 347 IPR001611 GO:0005515
Lele18g0473 1109 Pfam Leucine rich repeat 552 612 IPR001611 GO:0005515
Lele18g0473 1109 Pfam Leucine rich repeat 480 539 IPR001611 GO:0005515
Lele18g0473 1109 FunFam Leucine-rich repeat receptor protein kinase EMS1 520 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0473 Lele-ChrLele18 2771641 2775680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0473 25 1054 Receptor kinase-like Gene Family AT5G56040 53.890 0.0 1050
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lele18g0473 Pkinase 1.1e-39 CL0016