Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0462 ATGGGGTTCGAACCCAGAAATCAAGAACGCACCACTATCAAGTTCCTTTGTAGCTACGGCGGCAAGATTCTTCCTCGGGCCACGGATGGCAAGCTCCGCTACGTTGGCGGTCACACCAGAGTCCTCGCCGTCGATCCTTCTATTGCTTTTTCAGAGCTGATGGCGAAGCTTGAAGAATTGTCTGGTTCGCCCGTGACGTTGAGATGTCCATTGCCCAACGGAGACTTGGAGACGCTGATTTCGATAACCAACGATGAAGATCTGGCCCATATAGTTGAGGAATATGGTCGAGCTTCGTCGTCGTTAGCTCATCCGCTGAAGCTCAGAGCCATTCTTTGGCCTCCGAAATCGCTCAAGAAAATATCTCCTGCTTCGTCGTCTGCTTCTAGCGGAAATCAATCTCCGTCCAGATCACTCCACGCCTCCATCGAGTCCTTGCCTTATTCGGTGGCCTATCGCTTTATCTGTCACAACTGCTCACCGCCGATTGGATATCCAATCGGTGTCCGTAGCGGGAGCCCTAAGTTTTGGTACGGTGGTTCCAACTGCAGCAATTACTGTCACTGA 567 0.5168 MGFEPRNQERTTIKFLCSYGGKILPRATDGKLRYVGGHTRVLAVDPSIAFSELMAKLEELSGSPVTLRCPLPNGDLETLISITNDEDLAHIVEEYGRASSSLAHPLKLRAILWPPKSLKKISPASSSASSGNQSPSRSLHASIESLPYSVAYRFICHNCSPPIGYPIGVRSGSPKFWYGGSNCSNYCH 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0462 188 CDD PB1_UP2 16 112 - -
Lele18g0462 188 Pfam PB1 domain 28 99 IPR000270 GO:0005515
Lele18g0462 188 Gene3D - 31 112 - -
Lele18g0462 188 PANTHER OS05G0427100 PROTEIN-RELATED 8 136 - -
Lele18g0462 188 SUPERFAMILY CAD & PB1 domains 29 121 - -
Lele18g0462 188 SMART PB1_new 27 115 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0462 Lele-ChrLele18 2678778 2679444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0462 7 113 MAP Kinase Kinase Kinase AT5G57610 43.925 4.39e-25 99.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1752 21 25275530 25276832 Lele18g0462 18 2678778 2679444 CCT
Lele22g1727 22 22624742 22625182 Lele18g0462 18 2678778 2679444 CCT
Lele23g0255 23 1777958 1778287 Lele18g0462 18 2678778 2679444 CCT
Lele24g1693 24 22284997 22285437 Lele18g0462 18 2678778 2679444 CCT
Lele18g0462 18 2678778 2679444 Lele19g0482 19 2717713 2719348 hybridization
Lele18g0462 18 2678778 2679444 Lele20g0974 20 15814252 15814916 hybridization