Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0455 ATGAGCTCTTCCATGGAGGTTACCCTGCAAAATCCCCTAGTCGACGAAATGTCCGAACAAAATGGTGTCGCCGCCCAAGATCCAGGTCCCTCTCCCATGCTTTCTGAAGAGAAGGTCATCGTCTCCGTCGAAGTATGTTTGAAACCTTCAAGTACAGCTCGGATCGTGGATGTCCGTTCAGCCGTCGAGAGGATGCTCGAGAACAGGTGTTTGAGCTATATTGATGGACCCATTCCTCTGCCTCTTGATGACACGTTTCTTTCAGAAAACGTGCAAAGAATCTGTATTTGTGATACTGATGAGTCGACGAGCAATCATAACATTCTTTTGTTCTGGCAAGTCAAGCCTGATGTGCATGTCTTTCAGCTTAGTGAAGAAGGACCAAGCGAGGAAATAAGTAGTGATGGCCAACCTTCCAGCTTCAATGAATGGATTCTTCCAGCAAAAGAATTTGATGGCATGTGGGAAAGCTTAATATATGAATCTGGTCTCAAGCAAAGATTGTTAAGATATGCAGCGAGCGCTTTGCTTTTTACTGAAAAGGGCGTTGATCCATTTCTGGTTTCATGGAACCGCATTGTTCTCTTACATGGACCTCCTGGGACTGGAAAGACATCTTTATGTAAAGCATTAGCACAAAAACTATCCATTCGATTCAACCAAAGATACCCCCAGTGTCAGCTGATTGAAGTTAATGCACACTCTTTGTTCAGTAAATGGTTCTCTGAAAGTGGCAAGCTGGTTGCAAAGCTTTTCCAAAAGATTCAAGAAATGGTAGAGGAAGAAAACAATCTGGTATTTGTTTTGATTGATGAAGTCGAAAGCCTTGCTGCTGCCCGAAAATCTGCTTTATCCGGTTCTGAACCTTCAGACTCTATTCGGGTCGTCAATGCATTGTTAACTCAGATGGACAAGTTAAAATCTTCTCCAAATGTGATAATTCTAACTACATCCAACATAACTGCTGCTATCGATATTGCTTTTGTTGATCGAGCTGATATCACAGCATATGTTGGTCCTCCAACTCTCCAAGCTCGCTATGAAATACTAAGGTCGTGCTTGGAGGAATTGATGCGCACAGGGATCATGACAAGTTTACAGGATTGTATAAACATCAAGCTTCCAAATTATGCTAACGCTAAGGAGAAGTTGAACACACCTGAGAATGATGAAGCCGCTCAACTGTGTAAACAATTACTTGAAACTGCAGAGGCATGTGAGGGAATGAGCGGTAGGTCTTTGAGAAAGCTTCCATTCTTGGCACATGCTGCCCTTGCCAATCCTTCAGACTGCAACCCATTTAAGTTCTTATGTACAATGCTAGAAACAGCGAAGAGGGAGCGCTCTGAGCTTCCCGACTGA 1362 0.4339 MSSSMEVTLQNPLVDEMSEQNGVAAQDPGPSPMLSEEKVIVSVEVCLKPSSTARIVDVRSAVERMLENRCLSYIDGPIPLPLDDTFLSENVQRICICDTDESTSNHNILLFWQVKPDVHVFQLSEEGPSEEISSDGQPSSFNEWILPAKEFDGMWESLIYESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFNQRYPQCQLIEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKSALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADITAYVGPPTLQARYEILRSCLEELMRTGIMTSLQDCINIKLPNYANAKEKLNTPENDEAAQLCKQLLETAEACEGMSGRSLRKLPFLAHAALANPSDCNPFKFLCTMLETAKRERSELPD 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0455 453 ProSitePatterns AAA-protein family signature. 312 331 IPR003960 GO:0005524|GO:0016887
Lele18g0455 453 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 33 450 IPR044539 -
Lele18g0455 453 SMART AAA_5 190 342 IPR003593 -
Lele18g0455 453 Pfam ATPase family associated with various cellular activities (AAA) 194 338 IPR003959 GO:0005524|GO:0016887
Lele18g0455 453 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 422 IPR027417 -
Lele18g0455 453 CDD AAA 192 340 - -
Lele18g0455 453 Gene3D - 134 359 IPR027417 -
Lele18g0455 453 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 308 322 IPR001270 GO:0005524
Lele18g0455 453 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 194 212 IPR001270 GO:0005524
Lele18g0455 453 FunFam pachytene checkpoint protein 2 homolog 134 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0455 Lele-ChrLele18 2657174 2661862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0455 194 360 Calmodulin-binding Proteins AT3G56690 29.586 5.69e-13 69.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele18g0455 18 2657174 2661862 Lele19g0477 19 2697387 2703454 hybridization
Lele18g0455 18 2657174 2661862 Lele20g0978 20 15830411 15835045 hybridization