Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0452 ATGGCGATTTCTTCAGCCACAGCTTCTGCTTCCTCCAAGCTCATATTCCTCCATTCCTCTTCTTCTTCCTCCTCCTCCTCCTCTCTTTCTCTAAACCCCCACAAACTCTCATCCCCTACATCCCATCTCTCCTCTTCCTTCGTTAACCCCTCCACAATCCTCCACCTTTCTCCCTCCTCCACCTCCTCGGCCACCACTCGCCACCGCTCCTTCACAATCAGAGCTGCTCGTGGCAAGTTCGAGAGGAAGAAACCCCATGTCAATATCGGCACCATTGGCCATGTCGACCACGGCAAGACCACTCTCACTGCTGCTCTCACCATGGCCTTAGCGGCTCTGGGAAACAGTGCCCCAAAGAAGTACGACGAAATTGACGCTGCCCCTGAAGAGCGAGCTCGTGGTATCACCATTAATACTGCCACTGTCGAGTACGAGACTGAGAATCGCCACTACGCCCACGTAGACTGTCCTGGCCACGCCGATTATGTCAAGAACATGATTACCGGTGCTGCTCAGATGGACGGCGCTATTCTTGTAGTTTCCGGCGCCGACGGTCCAATGCCTCAGACTAAGGAGCATATACTTTTGGCTAAGCAAGTGGGTGTCCCGAATATGGTCGTGTTTCTAAACAAGCAAGATCAGGTTGATGACGAGGAGCTTCTGCAGCTTGTGGAATTGGAGGTTCGTGAGCTTCTTTCTTCTTATGAATTCCCTGGTGATGATGTCCCCATTATTTCTGGTTCTGCTCTGTTAGCTCTGGAGGCATTGATGGCGAATCCCGCCATTAAACGAGGAGAAAACCCATGGGTCGACAAAATTTACGAACTTATGGATTCCGTGGACAGCTACATTCCAATTCCTCAGCGTCAAACTGATCTTCCTTTCTTGCTGGCTATTGAAGACGTGTTCTCAATCACAGGTCGTGGAACTGTGGCCACAGGCCGTGTCGAGAGAGGTACAATTAAGGTTGGAGACACTGTAGATATTGTTGGTGTAAGGGAAACTAGAAACACAACCGTGACCGGGGTAGAAATGTTCCAGAAAATTCTTGATGATGCCATGGCTGGGGATAACGTGGGGTTGTTATTGAGAGGTATTCAGAAGGTTGATATTCAGAGAGGGATGGTTTTGGCTAAGCCAGGCACCATTACTCCACACACCAAGTTCGAAGCAATTGTTTATGTCCTCAAGAAGGAAGAAGGAGGAAGGCACTCACCATTCTTTGCTGGGTACAGGCCACAGTTTTACATGAGGACCACTGATGTGACTGGGAAAGTGACAGCCATAATGAATGATAAGGATGAAGAATCAAAGATGGTTATGCCTGGAGATCGTGTGAAGATGGTTGTTGAACTTATAGTGCCAGTGGCTTGTGAACAAGGAATGAGGTTTGCTATTAGAGAAGGAGGGAAGACTGTTGGAGCTGGTGTGATTCAATCCATCATTGAGTGA 1452 0.489 MAISSATASASSKLIFLHSSSSSSSSSSLSLNPHKLSSPTSHLSSSFVNPSTILHLSPSSTSSATTRHRSFTIRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALAALGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPAIKRGENPWVDKIYELMDSVDSYIPIPQRQTDLPFLLAIEDVFSITGRGTVATGRVERGTIKVGDTVDIVGVRETRNTTVTGVEMFQKILDDAMAGDNVGLLLRGIQKVDIQRGMVLAKPGTITPHTKFEAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTAIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0452 483 CDD EF_Tu 85 287 IPR041709 -
Lele18g0452 483 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 84 288 IPR000795 GO:0003924|GO:0005525
Lele18g0452 483 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 382 482 IPR009001 -
Lele18g0452 483 CDD EFTU_III 384 478 - -
Lele18g0452 483 Pfam Elongation factor Tu domain 2 309 377 IPR004161 GO:0005525
Lele18g0452 483 CDD EFTU_II 295 381 IPR033720 -
Lele18g0452 483 Gene3D Translation factors 290 418 - -
Lele18g0452 483 SUPERFAMILY Translation proteins 289 385 IPR009000 -
Lele18g0452 483 Pfam Elongation factor Tu GTP binding domain 84 285 IPR000795 GO:0003924|GO:0005525
Lele18g0452 483 TIGRFAM small_GTP: small GTP-binding protein domain 87 219 IPR005225 GO:0005525
Lele18g0452 483 PRINTS GTP-binding elongation factor signature 205 214 IPR000795 GO:0003924|GO:0005525
Lele18g0452 483 PRINTS GTP-binding elongation factor signature 168 179 IPR000795 GO:0003924|GO:0005525
Lele18g0452 483 PRINTS GTP-binding elongation factor signature 152 162 IPR000795 GO:0003924|GO:0005525
Lele18g0452 483 PRINTS GTP-binding elongation factor signature 132 140 IPR000795 GO:0003924|GO:0005525
Lele18g0452 483 PRINTS GTP-binding elongation factor signature 88 101 IPR000795 GO:0003924|GO:0005525
Lele18g0452 483 FunFam Elongation factor Tu 75 287 - -
Lele18g0452 483 TIGRFAM EF-Tu: translation elongation factor Tu 76 483 IPR004541 GO:0003746|GO:0005525|GO:0006414
Lele18g0452 483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 310 IPR027417 -
Lele18g0452 483 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 125 140 IPR031157 -
Lele18g0452 483 Pfam Elongation factor Tu C-terminal domain 382 481 IPR004160 -
Lele18g0452 483 Gene3D Translation factors 422 482 - -
Lele18g0452 483 FunFam Elongation factor Tu 422 482 - -
Lele18g0452 483 Hamap Elongation factor Tu [tuf]. 75 483 IPR004541 GO:0003746|GO:0005525|GO:0006414
Lele18g0452 483 Gene3D - 76 287 IPR027417 -
Lele18g0452 483 PANTHER ELONGATION FACTOR TU-RELATED 29 482 - -
Lele18g0452 483 FunFam Elongation factor Tu 290 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0452 Lele-ChrLele18 2644256 2645707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0452 82 481 Eukaryotic Initiation Factors Gene Family AT5G60390 29.663 1.05e-44 160
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele18g0452 18 2644256 2645707 Lele21g1746 21 25249584 25251657 CCT
Lele18g0452 18 2644256 2645707 Lele23g0263 23 1806059 1807878 CCT
Lele18g0452 18 2644256 2645707 Lele24g1687 24 22236593 22237970 CCT
Lele18g0452 18 2644256 2645707 Lele19g0472 19 2681248 2686046 hybridization
Lele18g0452 18 2644256 2645707 Lele20g0981 20 15846733 15848181 hybridization