Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0441 ATGTGCCAGGTTCTTCTGCCTCTCTCTCTCTCTCTCTCTGCCACCATCACCCTTCTGTTTCTGCCCCTTATCCTCAACCTCCTTCCTTCGGAAGCAGTAGTACAGACTTCTCTGGCAATGGCAGAAGCATGCCTTCTTTCTTTGCCCTCACTATTCTGCAACAAAACCAAACATCCCCATTTCTCCACAATTCCTTCTAAACCCCTAAAGCTTCAACTGTCGTGCTCCAACTCTTCACTCTTTTTACCTTCTGCATCTCTCATCGGGAGAACTCATTCTTCCTCTGTATTGACATTTGTAGCACAGACATCGGATGCGGCTCAGCAAGAAGCTGACGACGCAGTTGCTGTAGGTGATGAAGAACCCGCGTGGGCAAATCAAGAGGTCGACAATACCGAAGCTGGCGTTTCGAACTGGGAGGCTGAGGGTGGTGAAGAAGGGGAATACGTAGAAGCTTCTGAAGATGCCAAAATCTATGTCGGTAACTTGCCTTATGATGTTGATAGCCAGAAATTGGCTATGCTTTTTGAGCAAGCTGGAACTGTTGAAATTGCCGAGGTGATTTATAACAGGGAGACTGACCGAAGTCGTGGATTCGGATTTGTAACGATGAGCACAGTTGAAGAAGCAGAGAAAGCTGTAGAAAAGTTCAGCCGCTACGATTTGAATGGAAGACTCCTGACTGTTAATAAGGCTGCTCCAAGAGGATCACGACCTGAACGTCCATCTCGTGCCTTTGAACCTGCTTTCAGAATCCACGTCGGCAACTTGCCGTGGGATGTAGATAATGCTCGCCTGGAGCAAATGTTCAGAGAACAGGGTAAGGTGTTGAATGCTCGGATAGTTTATGACAGAGAGACTGGCCGATCACGTGGCTTTGGCTTCATCACAATGGCCACTGAGACTGAAATGAATGATGCTATTGCTGCTCTTGATGGTCAGAGCGTGGATGGGAGAGCCATCAGAGTGAGTGCTGCTGAGGAAAGGCCCAGGCGTGGCAACTTTTGA 1008 0.4831 MCQVLLPLSLSLSATITLLFLPLILNLLPSEAVVQTSLAMAEACLLSLPSLFCNKTKHPHFSTIPSKPLKLQLSCSNSSLFLPSASLIGRTHSSSVLTFVAQTSDAAQQEADDAVAVGDEEPAWANQEVDNTEAGVSNWEAEGGEEGEYVEASEDAKIYVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEKFSRYDLNGRLLTVNKAAPRGSRPERPSRAFEPAFRIHVGNLPWDVDNARLEQMFREQGKVLNARIVYDRETGRSRGFGFITMATETEMNDAIAALDGQSVDGRAIRVSAAEERPRRGNF 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0441 335 FunFam 31 kDa ribonucleoprotein, chloroplastic 240 334 - -
Lele18g0441 335 PANTHER OS02G0815200 PROTEIN 62 330 - -
Lele18g0441 335 SUPERFAMILY RNA-binding domain, RBD 154 244 IPR035979 GO:0003676
Lele18g0441 335 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 250 328 IPR000504 GO:0003723
Lele18g0441 335 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 253 322 IPR000504 GO:0003723
Lele18g0441 335 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 158 227 IPR000504 GO:0003723
Lele18g0441 335 SMART rrm1_1 157 230 IPR000504 GO:0003723
Lele18g0441 335 SMART rrm1_1 251 324 IPR000504 GO:0003723
Lele18g0441 335 CDD RRM_HP0827_like 157 234 - -
Lele18g0441 335 CDD RRM_HP0827_like 251 327 - -
Lele18g0441 335 SUPERFAMILY RNA-binding domain, RBD 243 333 IPR035979 GO:0003676
Lele18g0441 335 Gene3D - 100 240 IPR012677 -
Lele18g0441 335 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 156 234 IPR000504 GO:0003723
Lele18g0441 335 FunFam 31 kDa ribonucleoprotein, chloroplastic 101 239 - -
Lele18g0441 335 Gene3D - 241 335 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0441 Lele-ChrLele18 2594542 2596568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0441 154 332 Eukaryotic Initiation Factors Gene Family AT3G16380 33.511 1.27e-21 93.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele18g0441 18 2594542 2596568 Lele20g0991 20 15891056 15893033 hybridization