LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele18g0438	ATGGCTCTCCCTTCTGCTAAATCACACCTTTTACTCTTTTCATTATTCTCTCTTTTCTTCATCTTTCACGCCAAAGTTGATATTGATCCTTCAGATCTCAAAGCTTTCTTGACTTTTCAGAAGGACTTGGGTTTCCATGGTCAACACCAACCGTTTACCACACAACCATGTAACACCGACGGTGTGTTCTGCCAGAGGAGCCTCTCCGGCAATGAGAGCTATGCTCTCAGGATCACCAGAATCATCTTCAAGTCTAAGAAGCTTAATGGGGTTTTTCCCCCGGCTATTGGCCGTCTCTCTGAGATCAAGGAACTTTCTCTTTCCGACAACCAACTCGTGAGCCAGATTCCAGCTCAGATAGTTGACTGTCGGAAACTGGAAATTCTTGACCTCGGAAACAACCGCTTCTCCGGCGAGGTCCCTCCTGAATTGTCCTCCCTCATTCGCCTCCGAGTCCTGGACATATCTTCCAACAAATTCTCTGGGAATTTGAATTTCTTGAAGTATTTCCCCAACCTGGAAAGTCTCTCTGTGGCGGATAATCTCTTCACGGGCAGAATTCCAGCGTCCATACGTTCATGTCGCAATCTCCAACGCTTCAACTTTTCTGGGAATCACTTCCTTGAAATTCCTGTGCCTTTGATGAAGAGATTTGGACACTCATCATCTGATATCCCCAAAAGATACATCCTCACCGAGAATTCAGCTCCAACAACAAGTCACACAACTTCTGCTCAAGCTCCAAAATCCAGCAAGAACCACTCTTATATTTCATCTGCTCCAGCTCCAGCTCCAGCTCCAACAGCACAACATCATGGACACAAGTCAAAGAGGAAACTAGGTGGATGGATTCTTGGATTCATAGCGGGAGCTTTCGCTGGGAGCATATCTGGGTTCATATTTTCGTTGATGTTCAAGTTGGCCGTAGCAGTGATCAAAGGAGGAGGGAAGAGCACAGGCCCTGCAATTTATAGTCCATTGATTAAAAAGGCAGAGGACTTAGCTTTTCTGGAGAATGAAGATGGGTTGAATTCATTAGAAATCATTGGAAAAGGTGGCTGTGGAGTAGTTTACAAAGCTGAAATACCAGGAAGCAACAAAATCGTTGCTATAAAGAAGGTCAATCAACCTTCAAAAGATGCAGCAGAACTATCTGAAGAAGACAGCAAGGTTCTGAACAAAAAATTGCGTCAAATTCGATCTGAGATCAACACAGTTGGTCAAATTCGACATAGAAACCTTCTACCTCTGCTAGCTCATGTGTCAAGGCCCGATTGCCACTACCTTGTATATGAATACATGAAGAATGGAAGCTTACAAGATGTGCTGAATCAAGTTCAAGTAGGAGCAAGAGAGTTAGATTGGTTGGCACGTCATAAGATTGCAGTGGGTGTAGCAGCTGGCCTCGAGTACCTTCACATGCACCATACTCCACGTATCATTCACAGAGATCTCAAGCCTGGAAACATCCTTATTGATGATGATATGGAAGCTCGAATTGCAGATTTTGGGCTTGCAAAAGCAATGCCAGAAGCTTATACCCATGTCTCAACTTCAAACGTGGCTGGAACTGTGGGCTACATAGCACCAGAATATCACCAGACAGTGAAATTCACTGACAAGTGTGACATATACAGCTTTGGGGTTGTGCTTGGAATCTTGGTGATGGGAAAGATTCCATCTGATGCGTTCTTCCAGGACACAGAGGAGCTGAGTCTGGTGAAGTGGATGAGGAATGTGATGACGTCAGATAATCCTACGAGGGCAATTGATGAAAAGCTAAGAGGAAATGGATATGAGGAACAGATGCTTCTGGTTCTGAAGATTGCCTGCTTTTGCACTCTTGATGATCCCAAGGAGAGGCCTAACAGTAAGGATATCAGATGCATGTTGTCCCAAATCAGACACTGA	1911	0.4458	MALPSAKSHLLLFSLFSLFFIFHAKVDIDPSDLKAFLTFQKDLGFHGQHQPFTTQPCNTDGVFCQRSLSGNESYALRITRIIFKSKKLNGVFPPAIGRLSEIKELSLSDNQLVSQIPAQIVDCRKLEILDLGNNRFSGEVPPELSSLIRLRVLDISSNKFSGNLNFLKYFPNLESLSVADNLFTGRIPASIRSCRNLQRFNFSGNHFLEIPVPLMKRFGHSSSDIPKRYILTENSAPTTSHTTSAQAPKSSKNHSYISSAPAPAPAPTAQHHGHKSKRKLGGWILGFIAGAFAGSISGFIFSLMFKLAVAVIKGGGKSTGPAIYSPLIKKAEDLAFLENEDGLNSLEIIGKGGCGVVYKAEIPGSNKIVAIKKVNQPSKDAAELSEEDSKVLNKKLRQIRSEINTVGQIRHRNLLPLLAHVSRPDCHYLVYEYMKNGSLQDVLNQVQVGARELDWLARHKIAVGVAAGLEYLHMHHTPRIIHRDLKPGNILIDDDMEARIADFGLAKAMPEAYTHVSTSNVAGTVGYIAPEYHQTVKFTDKCDIYSFGVVLGILVMGKIPSDAFFQDTEELSLVKWMRNVMTSDNPTRAIDEKLRGNGYEEQMLLVLKIACFCTLDDPKERPNSKDIRCMLSQIRH	636

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele18g0438	636	MobiDBLite	consensus disorder prediction	236	274	-	-
	Lele18g0438	636	Gene3D	Transferase(Phosphotransferase) domain 1	438	635	-	-
	Lele18g0438	636	PANTHER	LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1	75	635	-	-
	Lele18g0438	636	Gene3D	Phosphorylase Kinase; domain 1	342	437	-	-
	Lele18g0438	636	SUPERFAMILY	Protein kinase-like (PK-like)	336	631	IPR011009	-
	Lele18g0438	636	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	480	492	IPR008271	GO:0004672\|GO:0006468
	Lele18g0438	636	Gene3D	Ribonuclease Inhibitor	167	223	IPR032675	-
	Lele18g0438	636	Gene3D	Ribonuclease Inhibitor	31	166	IPR032675	-
	Lele18g0438	636	SMART	serkin_6	343	634	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele18g0438	636	Coils	Coil	382	402	-	-
	Lele18g0438	636	Pfam	Leucine Rich Repeat	125	147	IPR001611	GO:0005515
	Lele18g0438	636	MobiDBLite	consensus disorder prediction	236	258	-	-
	Lele18g0438	636	FunFam	Leucine-rich repeat receptor protein kinase EMS1	72	167	-	-
	Lele18g0438	636	SUPERFAMILY	L domain-like	53	211	-	-
	Lele18g0438	636	FunFam	Leucine-rich repeat receptor-like protein kinase	434	636	-	-
	Lele18g0438	636	ProSiteProfiles	Protein kinase domain profile.	343	636	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele18g0438	636	Pfam	Protein kinase domain	345	625	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele18g0438	636	CDD	STKc_IRAK	349	634	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele18g0438	Lele-ChrLele18	2579478	2581388	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele18g0438	1	636	Receptor kinase-like Gene Family	AT2G31880	61.231	0.0	801

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XI-2	Lele18g0438		Pkinase	9.8e-46	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele18g0438	18	2579478	2581388	Lele19g0457	19	2627189	2629099	hybridization
	Lele18g0438	18	2579478	2581388	Lele20g0994	20	15910852	15914488	hybridization