Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0432 ATGGCCGTCAACACCATCCCGCCGACTGATGTTCCCGGTATTTCTCCCATCGCCGGCATCGACTACCTGAGCTGCCGCGTCTTACCCGAACCTGATGTTTTTATTCACACATCCAGTGGCGATCGCATTCCCGCGCACACAAGCATTCTGGCTTCAGTGTCTCCGGTTTTGGAGAATATCATAGATCAGCCACGCAGGCATCGGAGTTCCGAGAGAATAATTCAAATACACGGTGTTCCTTGCGAAGCCGTCACTGCTTTTCTCGGCTTCCTTTATTGTTCCAGGTGCACGGATGAGCAGATGCAGAAGTATGGGATTCATCTGCTCGCATTGTCTCACGTGTATTTGGTGCCACAACTGAAGCAGAGGTGCATCAAGGTTCTTGCCGAACGGTTAACGATCGAGTATGTGGTGGATTTGCTCCAACTTGCGAGGCTCTGCGACGCGCCAGATCTTTACATCAAGTGTATGAAGCTACTCACCAATCACTTCAAATCTGTGGAAGCAACAGAGGGCTGGAAATTCTTGCAGAAGTATGATCCATGGCTTGAGCTGGACATCCTCCAATTCATGGACGAGGACGAATCGGTAAATTCCAAATTCCCATTAGTTCAATTGAATATGTATAAATCAATCATGATTTCTCTTAGGCGAATTTCCAAAATTAAAGTGAGTGATCCAATGGGAATGAAACAGAGGAAGAAGAGATCAAGGAAGCAGAGGGAAGAGCTGAGGCTGTACGGGGAGCTGAGCGAGGCGATGGAGTGTCTGGAACACATATGCACGGATGGGTGCACCGACGTTGGGCCTTACGGCGTGGAGCTCCGGAAAGAGAGGAGGCCGTGCGGCAAATACGCCACGTGTCAAGGTATTCAGCTCTTAATCAAGCACTTCGCTACGTGTAACAAGAGGATGAACGGTGGGTGCTTACGCTGCAAGCGAATGTGGCAACTCTTCCGACTTCATTCCAACATTTGCCCGCAAACCCATTCTTGCAAGGTTCCTCTTTGCAGAGCTTCCCTAGGTAGGCCTGGGTTGGTGTCGTTGATTTTGATTGGATTGGTTGCAACATAG 1074 0.4944 MAVNTIPPTDVPGISPIAGIDYLSCRVLPEPDVFIHTSSGDRIPAHTSILASVSPVLENIIDQPRRHRSSERIIQIHGVPCEAVTAFLGFLYCSRCTDEQMQKYGIHLLALSHVYLVPQLKQRCIKVLAERLTIEYVVDLLQLARLCDAPDLYIKCMKLLTNHFKSVEATEGWKFLQKYDPWLELDILQFMDEDESVNSKFPLVQLNMYKSIMISLRRISKIKVSDPMGMKQRKKRSRKQREELRLYGELSEAMECLEHICTDGCTDVGPYGVELRKERRPCGKYATCQGIQLLIKHFATCNKRMNGGCLRCKRMWQLFRLHSNICPQTHSCKVPLCRASLGRPGLVSLILIGLVAT 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0432 357 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 30 338 IPR044513 -
Lele18g0432 357 Pfam TAZ zinc finger 251 337 IPR000197 -
Lele18g0432 357 Gene3D TAZ domain 237 341 IPR035898 -
Lele18g0432 357 SMART BTB_4 31 132 IPR000210 GO:0005515
Lele18g0432 357 SMART TAZ_2 243 338 IPR000197 -
Lele18g0432 357 ProSiteProfiles BTB domain profile. 31 100 IPR000210 GO:0005515
Lele18g0432 357 Gene3D - 133 205 - -
Lele18g0432 357 Gene3D Potassium Channel Kv1.1; Chain A 30 132 IPR011333 -
Lele18g0432 357 CDD BACK 133 176 - -
Lele18g0432 357 Pfam BTB/POZ domain 31 130 IPR000210 GO:0005515
Lele18g0432 357 SUPERFAMILY POZ domain 32 131 IPR011333 -
Lele18g0432 357 SUPERFAMILY TAZ domain 245 339 IPR035898 -
Lele18g0432 357 FunFam BTB/POZ and TAZ domain-containing protein 2 133 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0432 Lele-ChrLele18 2545814 2547631 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Lele18g0432 BTB 1e-12 CL0033
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1725 21 25109630 25112428 Lele18g0432 18 2545814 2547631 CCT
Lele22g1700 22 22455403 22457833 Lele18g0432 18 2545814 2547631 CCT
Lele23g0286 23 1956125 1958717 Lele18g0432 18 2545814 2547631 CCT
Lele24g1669 24 22134929 22136841 Lele18g0432 18 2545814 2547631 CCT
Lele18g0432 18 2545814 2547631 Lele19g0451 19 2596264 2599086 hybridization
Lele18g0432 18 2545814 2547631 Lele20g1001 20 15954438 15957376 hybridization