Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0431 ATGACAATCTCTTCCCTCTCCCTGCTCTTCTTTCTCTCCTTTCTTCTCTGCACAACCCTCATTTCCTCCAGAGTACTCCCCCAAAACCCAGAATTGGTAGTACAAGAAGTTGACAGGAAGATAAATGATTCTATCGCTAGGAGGAACTTGGGGTACCTATCCTGTGGAACTGGCAACCCCATTGACGATTGCTGGAGGTGTGACCCCGACTGGGAGAAGAACAGGCAGAAGCTAGCCGATTGTGCAATTGGGTTCGGGAAGAATGCTGTTGGAGGCAAGGACGGTCAGATTTATGTGGTGACGGACTCCGGCGACGACGACCCGGTGAACCCGAAGCCGGGGACTCTCCGGTACGCCGTGATCCAAGACGAGCCGTTGTGGATCATATTTGCCCGAGACATGGTGATCCAGCTGAAAGAAGAGCTGCTAATGAACTCGTTCAAGACCATCGATGGCAGAGGCTCGAGCGTGCATATTGCGGGTGGTCCATGCATTACGATCCAGTACGTGACCAACATTATAATCCACGGCATTAACATCCATGACTGTAAGCAAGGTGGGAACACTATGGTGAGGGACTCCCCACGGCACTACGGGTGGAGGACGGTATCGGACGGCGACGGCGTGTCCATCTTCGGCGGGAGCCACATATGGGTGGACCATTGCTCCTTGTCAAATTGCAACGACGGGCTGATCGATGCGATTCATGGGTCCACCGCTATCACAATCTCCAACAATTATATGACACACCACGACAAGGTCATGTTATTGGGTCACAGTGATTCCTATACACAGGACAAGAACATGCAAGTCACTATAGCCTTTAATCACTTCGGAGAAGGGCTAGTTCAGAGAATGCCGAGATGTAGGCATGGATATTTCCATGTTGTGAACAATGACTACACCCATTGGGAAATGTATGCCATTGGTGGAAGTGCTAACCCCACCATCAACAGCCAGGGCAACAGATTTGTAGCACCCGATGACAGATTCAGCAAAGAGGTGACGAAGCATGAGGATGCGCCGGAGAGCGAGTGGAAGAACTGGAACTGGAGGTCGGAAGGGGACTTGTTGGTAAACGGTGCGTTTTTTACGGCGACAGGAGCCGGAGCGTCGTCAAGCTATGCGAGGGCTTCGAGTCTGAGTGCGAGGCCATCTTCACTTGTGGGTACGATCACCGGAGGCGCCGGTACTCTGAGCTGCCGGAAAGGTTCGGGTTGCTGA 1224 0.5237 MTISSLSLLFFLSFLLCTTLISSRVLPQNPELVVQEVDRKINDSIARRNLGYLSCGTGNPIDDCWRCDPDWEKNRQKLADCAIGFGKNAVGGKDGQIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVIQLKEELLMNSFKTIDGRGSSVHIAGGPCITIQYVTNIIIHGINIHDCKQGGNTMVRDSPRHYGWRTVSDGDGVSIFGGSHIWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKHEDAPESEWKNWNWRSEGDLLVNGAFFTATGAGASSSYARASSLSARPSSLVGTITGGAGTLSCRKGSGC 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0431 407 PRINTS Pollen allergen Amb family signature 141 157 IPR018082 -
Lele18g0431 407 PRINTS Pollen allergen Amb family signature 307 326 IPR018082 -
Lele18g0431 407 PRINTS Pollen allergen Amb family signature 105 130 IPR018082 -
Lele18g0431 407 PRINTS Pollen allergen Amb family signature 81 98 IPR018082 -
Lele18g0431 407 PRINTS Pollen allergen Amb family signature 349 373 IPR018082 -
Lele18g0431 407 PRINTS Pollen allergen Amb family signature 285 304 IPR018082 -
Lele18g0431 407 PRINTS Pollen allergen Amb family signature 205 226 IPR018082 -
Lele18g0431 407 PRINTS Pollen allergen Amb family signature 378 401 IPR018082 -
Lele18g0431 407 SMART amb_all 133 330 IPR002022 -
Lele18g0431 407 Gene3D - 58 400 IPR012334 -
Lele18g0431 407 PANTHER PECTATE LYASE 18-RELATED 27 405 IPR045032 GO:0030570
Lele18g0431 407 SUPERFAMILY Pectin lyase-like 36 401 IPR011050 -
Lele18g0431 407 FunFam Pectate lyase 58 400 - -
Lele18g0431 407 Pfam Pectate lyase 144 324 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0431 Lele-ChrLele18 2531768 2533209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0431 5 407 Polysaccharide Lyase AT5G63180 80.988 0.0 681