Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0430 ATGTTGCCAAGGAAGATGGCCAAAAATGCACATGCTCATTTCATACTTGGCCTAATGTACCAAAGGTTGGGCCAACCTCAAAAGGCTCTATCGGCATATGAAAAGGCTGCAGAGACCTTACTTCGGTCTGAGGCTGAGATTAGTCGGCCAGAGTTGCTTTCTTTAGTTCAAATTCACCATGCACAGTGCCTGATACTAGAAAGTGCAGTGAAAAATAGTTCAGATAAAGAACTTGAACCTCAAGAACTTGAGGAAATTCTCTCCAAACTAAAGGAGTCTGTGCAATCAAATATCAGGCATGCAGCTGTATGGAATACCCTAGGATCTGTACTTCTTAAAACTGGCCGTTTGCAGGTACAAGTGCCTTCTAGCAACTCTTCTTTGATCAACTATGCTGCCCTTTTATGTAAATATGCTTCAGTTGTAGCAGGTGCTGGTGCAAGTGCTCCAGAAGGTGCTTCTATAGACCAGGTTGCAGCTGTTAATGTGGCAAAGGAATGTTTGTTAGCTGCAGTAAAAGCAGATCCCAAATCAGGACATATCTGGACATCTTGCCAATGCATTTTCTCTGCCGCAAGACTGGATCCCAATTGCATGTCTACTCGATATGCTGTTGCCATCCATAGAATAATGGATGCTGAAAGATCTCTAGTTCGGGAGCAGCTTTCATGGGCTGGAAATGAGATGGCGTCTATTATAAGAGATGGTGATTCATCCTTGGTTGAGCTTCCTGTAGCGTGGGCTGGGCTTGCCATGGTTCACAAGGCCCAGCATGAAATCACAGCCGCTTTTGAAACTGAACAGCATGACCTGATGGAAGTTAAAGAGCATGCTGCTATAGCAGAAGATCCCAATGATGCTGTGCCGTGGCACCAACTCGGTCTTCATGATCTCTGTACTCGTCAATTCAAAACATCTCAAAGGTACCTCAAAGCTGCTGTTGCCCGTGACAAGAATAGCAGCTATGCATGGTCAAATCTAGGTGCGCTCAATCTCCTTCTTCCCTTAAAACACCTAAACGTTCTTTCTGGAGTTTACACTTCATACCATTGAACGAGCGCATTCTATATTATCCAACCTGGGGAATCTCTATCGCCAGCAGAAACAATATCACGTGCCAAGGCAATGTTTACAAAGTCACTTGAACTACAACCTGGCTACGCTCCTGCATATAACAATCTGGGTCTTCTTGTTGTTCCTGAGGGTCTGTGGGAAGAGGCCAAGTATTGTTTTGACAAGGCCCTCCAATCAGATCCATTACTGGATGCCGCAAAGTCTAACGGGATTAAGGCGATCGCCATACTATCGCTTTGGGATTACCTCCTGCAATCTCCTGTTCACATCCACTGCATTGGAATCCGTCCATTGCTCTGTTTGGTTTTTGAGGGAGACAAAAGGCACAAGTTCAACTCCTCTTGA 1419 0.4503 MLPRKMAKNAHAHFILGLMYQRLGQPQKALSAYEKAAETLLRSEAEISRPELLSLVQIHHAQCLILESAVKNSSDKELEPQELEEILSKLKESVQSNIRHAAVWNTLGSVLLKTGRLQVQVPSSNSSLINYAALLCKYASVVAGAGASAPEGASIDQVAAVNVAKECLLAAVKADPKSGHIWTSCQCIFSAARLDPNCMSTRYAVAIHRIMDAERSLVREQLSWAGNEMASIIRDGDSSLVELPVAWAGLAMVHKAQHEITAAFETEQHDLMEVKEHAAIAEDPNDAVPWHQLGLHDLCTRQFKTSQRYLKAAVARDKNSSYAWSNLGALNLLLPLKHLNVLSGVYTSYHXTSAFYIIQPGESLSPAETISRAKAMFTKSLELQPGYAPAYNNLGLLVVPEGLWEEAKYCFDKALQSDPLLDAAKSNGIKAIAILSLWDYLLQSPVHIHCIGIRPLLCLVFEGDKRHKFNSS 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0430 472 Gene3D Tetratricopeptide repeat domain 4 193 IPR011990 GO:0005515
Lele18g0430 472 Gene3D Tetratricopeptide repeat domain 275 334 IPR011990 GO:0005515
Lele18g0430 472 ProSiteProfiles TPR repeat profile. 388 421 IPR019734 GO:0005515
Lele18g0430 472 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 4 117 - -
Lele18g0430 472 Pfam Tetratricopeptide repeat 10 38 IPR019734 GO:0005515
Lele18g0430 472 SUPERFAMILY TPR-like 6 206 IPR011990 GO:0005515
Lele18g0430 472 SMART tpr_5 388 421 IPR019734 GO:0005515
Lele18g0430 472 SMART tpr_5 10 43 IPR019734 GO:0005515
Lele18g0430 472 Gene3D Tetratricopeptide repeat domain 357 432 IPR011990 GO:0005515
Lele18g0430 472 SUPERFAMILY TPR-like 10 420 IPR011990 GO:0005515
Lele18g0430 472 ProSiteProfiles TPR repeat profile. 10 43 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0430 Lele-ChrLele18 2520484 2526335 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0430 243 457 Glycosyltransferase AT3G04240 25.221 6.07e-08 53.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele18g0430 18 2520484 2526335 Lele19g0448 19 2568186 2576376 hybridization
Lele18g0430 18 2520484 2526335 Lele20g1005 20 15983219 15999238 hybridization