Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0428 ATGCCGAATACGGTTATAGCGTCCCTTGAACCGTATAAAGTTATGTACAATTACGAGGGTTTGAAATGTGGAGGGAGAATGGATCCCTCTGAATCCGATTTAACAGCTGTTTTGAACTCCATCGAAGACCCATTATTGGGCATTGAGTTAGCTTTTCCCCCCCCTAGTTCCCATCACGATCCTGAAACGTCAGATCTCAATCCCAGGGATGAGACTGATGCCCTTCAGGAAGCCCTGCAGAACAAGTTGGATTTGAAGGATAAGGATGAAGGGGTCGAAGAGGAAAAGGAGAAGAAAGATTCCGAATTTGATGATGGTAAAGAAGTAAGTGGTATAGCTGATGCCGGAGAATCTGAGAAGGAACAAGTGTTTGATGAAGTTAACCAGAATTGGAATGGAAATGGGGACGATGGTTGGGGGGAGAATGTGAACGAGAGTGAGAATGATAATTTTGGTATAGATAATGTAACTGTCGGTGATGAAGTGGAGAAGAACGATAAGGAAAGCAGCGGTAGAGCACTCCAGCATCCGGTGAGGCCCGAAGCTGAAGATTGCGCGTTCTATCTCAAGACTGGAACTTGCAAGTTTGGGTTTAACTGCAAGTTCAATCACCCTCTTAGGAGGAAAATCCAGGTTGTTAAGGAGAAGGGAAGAGAAAGAGAAGAATCAGTAGAAAGATCAGGGCAGACTGAATGCAAGTATTATCTAAAGTCAGGAGGTTGTAAATACGGAAAGGCTTGTAAATTTAACCACACCAGAGGAAAATGTTCTGCAACTGCAACCACTATTTTGGAACTTAACTTTCTTGGCCTGCCGATTCGTCTGGGAGAGAAAGAGTGCCCATATTATATGCGTACTGGCTCTTGTAAGTTTGGCGCAAACTGCAAATTCAATCATCCTGATCCTAGTGTTGTTGGAGGAAGTGAACCTCCTTCAACATATGCTAATGGCGGGGCTGTTCCTTTACAAGGTGTATCGCAGCCAAACATACCCTCTTGGTCTTCTCCAAGAACATTAAATGAAACTGCTCCTTTTGTGCCAGTGATGATTCCACCTGTTCAAGGGGTTTCTCCCCAAAGTTCTGACTGGAATGGATATCAGGCACCCGTCTACCTACCTGAGAGGATTATGCACCCACCATCTACTTACGTTGTGAACAACCCAGCTTTTGAATCAAATGTCTATATGCATCATCCTCCAAAGCAGATGCAGATTGATGAGTTTCCAGAAAGGCCTGGTGAACCAGAGTGCAGTTACTACTTAAAAACTGGGCATTGCAAATTCAAATCCAATTGTAAATTTCACCATCCAAAGAACCGTATTGCAAGACCTCCATGCACCCTAAGTGACAAGGGTCTGCCTTTCAGACCTGATCAGGGTGTGTGCTCGCACTATAGCCGCTATGGAATATGCAAATATGGGCCATCGTGTAAGTTTGACCACCCAACGAACCTATTGCCGTCAAACATGCCTGGACTTGATCAGGAATCTGCTAGTGTGGAGGTGGCTGAGATGACTGAAAGTGGAGGTTCAGGTAACTCCCCAATTAAGCAGACTGTGTAA 1563 0.4472 MPNTVIASLEPYKVMYNYEGLKCGGRMDPSESDLTAVLNSIEDPLLGIELAFPPPSSHHDPETSDLNPRDETDALQEALQNKLDLKDKDEGVEEEKEKKDSEFDDGKEVSGIADAGESEKEQVFDEVNQNWNGNGDDGWGENVNESENDNFGIDNVTVGDEVEKNDKESSGRALQHPVRPEAEDCAFYLKTGTCKFGFNCKFNHPLRRKIQVVKEKGREREESVERSGQTECKYYLKSGGCKYGKACKFNHTRGKCSATATTILELNFLGLPIRLGEKECPYYMRTGSCKFGANCKFNHPDPSVVGGSEPPSTYANGGAVPLQGVSQPNIPSWSSPRTLNETAPFVPVMIPPVQGVSPQSSDWNGYQAPVYLPERIMHPPSTYVVNNPAFESNVYMHHPPKQMQIDEFPERPGEPECSYYLKTGHCKFKSNCKFHHPKNRIARPPCTLSDKGLPFRPDQGVCSHYSRYGICKYGPSCKFDHPTNLLPSNMPGLDQESASVEVAEMTESGGSGNSPIKQTV 520
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0428 520 ProSiteProfiles Zinc finger C3H1-type profile. 411 439 IPR000571 GO:0046872
Lele18g0428 520 Gene3D - 216 304 - -
Lele18g0428 520 SUPERFAMILY CCCH zinc finger 455 482 IPR036855 GO:0046872
Lele18g0428 520 MobiDBLite consensus disorder prediction 81 154 - -
Lele18g0428 520 Gene3D - 142 215 - -
Lele18g0428 520 SUPERFAMILY CCCH zinc finger 229 255 IPR036855 GO:0046872
Lele18g0428 520 SUPERFAMILY CCCH zinc finger 416 440 IPR036855 GO:0046872
Lele18g0428 520 Coils Coil 75 95 - -
Lele18g0428 520 SUPERFAMILY CCCH zinc finger 275 302 IPR036855 GO:0046872
Lele18g0428 520 ProSiteProfiles Zinc finger C3H1-type profile. 179 207 IPR000571 GO:0046872
Lele18g0428 520 Gene3D - 390 450 - -
Lele18g0428 520 Gene3D - 456 509 - -
Lele18g0428 520 SUPERFAMILY CCCH zinc finger 176 207 IPR036855 GO:0046872
Lele18g0428 520 MobiDBLite consensus disorder prediction 81 124 - -
Lele18g0428 520 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 229 251 IPR000571 GO:0046872
Lele18g0428 520 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 413 438 IPR000571 GO:0046872
Lele18g0428 520 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 461 482 IPR000571 GO:0046872
Lele18g0428 520 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 277 300 IPR000571 GO:0046872
Lele18g0428 520 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 183 205 IPR000571 GO:0046872
Lele18g0428 520 PANTHER PROTEIN PHOSPHATASE RELATED 35 495 - -
Lele18g0428 520 MobiDBLite consensus disorder prediction 125 153 - -
Lele18g0428 520 ProSiteProfiles Zinc finger C3H1-type profile. 226 254 IPR000571 GO:0046872
Lele18g0428 520 ProSiteProfiles Zinc finger C3H1-type profile. 456 484 IPR000571 GO:0046872
Lele18g0428 520 ProSiteProfiles Zinc finger C3H1-type profile. 274 302 IPR000571 GO:0046872
Lele18g0428 520 SMART c3hfinal6 179 206 IPR000571 GO:0046872
Lele18g0428 520 SMART c3hfinal6 411 438 IPR000571 GO:0046872
Lele18g0428 520 SMART c3hfinal6 274 301 IPR000571 GO:0046872
Lele18g0428 520 SMART c3hfinal6 458 483 IPR000571 GO:0046872
Lele18g0428 520 SMART c3hfinal6 226 253 IPR000571 GO:0046872
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele18g0428 Lele-ChrLele18 2505696 2509984 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0428 176 519 C2H2 Transcription Factor Family AT3G02830 40.111 1.19e-74 239
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele18g0428 zf-CCCH 1.6e-08 CL0537