Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0360 ATGCCTTTTGAAATAATGAACCAGAGGGGCATATCTGCCTCGTCCCACCTTTTTGATGACAATTCCTTTTTTCCTGAGAGGACTGTTGTATTGCAGAAGCCAAAATCCTTTCATGACCATTATTTACAAGGGAAAATAGGAGCATCACCGCGAAGCATTTCAAATACATCGTCATCTCTAGAAATGAGTGCTAACTCCGGCTTGCCAATGTCACAAACAAGTCTGTCGGGAGAAGTTACAGAAAAGCTGCATGTTGGTGAAGGAGGCATCATTGATGTGTTGAAGTCTACCAAGGAATCAATGAATCCTCACCCCAGATCATGGTCTAATGTGCATATGCAGCCAGAATCTACATCTTATAGTTTAACTGGAAAAAAGATTCTCACTGATACTGCTTCTCATGAGAGCAGCCTATTCTCTAGCTCACTGTCTGAGATATTTAGCCAAAAATTGAGGTTATCTAGGAATGATATCCTGTCTCGTCAGCCTGTAACCATTGGTTCGTTTCCTGAGGAAGAACCGTATAAATCTCTTGAAGAAATTGAGGCGGACACTATTGGGAATCTTCTTCCTGATGAAGATGATCTGTTTTCTGGTGTTACTAATGAGTTGGGATACACTGCCAATGCCAGAACAAGTGACGACTTTGAGGAGTTCGATTTGTTTAGCAGTGGCGGAGGCATGGAACTAGAAGGAGATGAACATCTAAGTTTGGGAAAGAAAATCGGTAGTCTGGATGTAGATTCTGGTTATTTTGGAGGTTTTCAAGGAAAACTTCCTTTTGGTGAACAGCCTTCTAGAACACTTTTTGTTAGAAACATCAATAGTAATGTTGAAGATTCTGAGCTAAAGGCTCTTTTTGAGCAATATGGAGAAATCCGAACCATTTATACAGCCTGCAAGCATCGTGGGTTTGTGATGATTTCTTACTATGACCTACGGGCAGCACAAAATGCTATGCAAGCACTTCAGAATCGATCATTGAGATCTAGGAAACTTGACATACACTATTCAATTCCAAAGGGCAATGCTCCTGAGAGGGATCTAAGCCATGGTACGCTAGTGCTGTCTGGTCTTGATTCTTCTGTTTCAAATGACGAGCTTCAAAAGATTTTTGGATTTTATGGAGAACTAAAAGAAATCTATGAATATCCAGAAGTAAGTTATAAAAAAATTATTGAATTTTATGATGCACGAGCTGCAGAAGCTGCTCTTCGTGCATTAAACAGGAGTGACATTGCTGGTAAGCAGATCAAGATTGAACCTGGCTTTCCTCGGGGAACAACATGTCTGACGCATGAGTCTCACAATGGCCAAGATGAACCTGATTTTGGTCAAAGTATCTGTGACAACTTATCACTAAGACACAAGGCAACGATGTCTTCTGGAGTAATTGCATCTGGATGCTTAGAAAATGGATCCAATCCAGGATTTCGCTCTGCAATACAGCAACCTATTAATGCATTAATTGATAATGGTTTCTCTCCTGTGAATTCTAGCATCCACAAATCAGTGAGAGGGCCAACTTCTGGAAAAGTGCCTAGTGTTTGCGATTCCAGCAACTTCCTTGATGCAATGAAATTTGCTTCTGTTCCAAGATTCCATCCTCATTCCCTCCCTGATTATCATGATAGTTTTGCTAATGGTAGTCCTTACAACTTTTCAAGCACTGTTGGCAATGTGGCTGGCAATATTGGTACTGCAGTGACAGACAGCTCGGATAGCAGGCACAATCAGGGAATAGGTTCAACTGGGAATCTGATGGAATTTACTGGAGCAGGAAATGGGAACCATCAACGTCATGGACTTTATCATGTGTGGAACAGCTCCAACTTGCCTCAGGAACCTTCAACAAATCCCATGCTTTGGCAGAAAACACCATCATTTGTTAATGGTCCTTGTGCTCCTGGCCTTTCGCAAATGCCCAGCTTTCCTAGAACACAGCCTCACATGCTGAGAGCATCACATATGGACCATCATGTTGGGTCAGCTCCTGTTAATGCAACACCCTGGGACAGGCAGCACTCTTATTTGGGAGTGTCTCCTGAAACTTCTGGTTTTCGTATGGGTTCTCTAGGAAGTTCTGGTTTACCTGGTAGCTGGCAATTGCATCCTCCAGATTTTTCTTCTCACAACATGTTTCATCATATCGGTGGAAATGGTGCAGAATTGACGCCTACTGCTCGGCAAAACTCTCCTAGTCAGTTGTCACACGTTTTCCCTGGGAGACATCCCATGACTTCTATGTCCAAACTTGATTCCAATGAACGAATGAGGAATCTGTATCCCCTCCGGAAAAGTGAAGCTAATGCTAATAATGCTGATAAAAAGCAATATGAACTTGATCTGGGTGGCATAATGCGTGGGGAAGACAGCCGAACAACTCTCATGATAAAAAATATTCCCAACAAGTATACTTCAAAGATGCTTCTAGCTGCTATAGATGAGCAATGTCGGGGAACTTATGATTTTCTATATTTGCCAATTGACTTTAAGAACAAATGTAATGTTGGCTATGCATTTATTAATATGTTGGATCCTGTTCAGATTATTCCATTCCACCAGGCTTTTAATGGGAAAAAATGGGAGAAATTTAATAGTGAAAAGGTAGCCTCACTTGCATATGCCCGAATTCAGGGTAAAGCTGCACTTATTGCTCACTTCCAGAATTCAAGCCTGATGAATGAGGACAAGCGTTGCCGTCCTATTCTGTTCCACACTGATGGCCCGAATGCTGGTGATCCGGAGCCCTTCCCCATGGGTACTAACATTAGAATGAGGCCCGGAAAATCTCGCGGTGGTACTAATAATGAGGAGAATCGCAGCCAGGGGAGTCCTTCAACTTTGGGAAGCGGAGAGGGATCTACTACCAATGTTATAGATTCTTCATTGAGCTCTTAA 2901 0.4219 MPFEIMNQRGISASSHLFDDNSFFPERTVVLQKPKSFHDHYLQGKIGASPRSISNTSSSLEMSANSGLPMSQTSLSGEVTEKLHVGEGGIIDVLKSTKESMNPHPRSWSNVHMQPESTSYSLTGKKILTDTASHESSLFSSSLSEIFSQKLRLSRNDILSRQPVTIGSFPEEEPYKSLEEIEADTIGNLLPDEDDLFSGVTNELGYTANARTSDDFEEFDLFSSGGGMELEGDEHLSLGKKIGSLDVDSGYFGGFQGKLPFGEQPSRTLFVRNINSNVEDSELKALFEQYGEIRTIYTACKHRGFVMISYYDLRAAQNAMQALQNRSLRSRKLDIHYSIPKGNAPERDLSHGTLVLSGLDSSVSNDELQKIFGFYGELKEIYEYPEVSYKKIIEFYDARAAEAALRALNRSDIAGKQIKIEPGFPRGTTCLTHESHNGQDEPDFGQSICDNLSLRHKATMSSGVIASGCLENGSNPGFRSAIQQPINALIDNGFSPVNSSIHKSVRGPTSGKVPSVCDSSNFLDAMKFASVPRFHPHSLPDYHDSFANGSPYNFSSTVGNVAGNIGTAVTDSSDSRHNQGIGSTGNLMEFTGAGNGNHQRHGLYHVWNSSNLPQEPSTNPMLWQKTPSFVNGPCAPGLSQMPSFPRTQPHMLRASHMDHHVGSAPVNATPWDRQHSYLGVSPETSGFRMGSLGSSGLPGSWQLHPPDFSSHNMFHHIGGNGAELTPTARQNSPSQLSHVFPGRHPMTSMSKLDSNERMRNLYPLRKSEANANNADKKQYELDLGGIMRGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMLDPVQIIPFHQAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGTNIRMRPGKSRGGTNNEENRSQGSPSTLGSGEGSTTNVIDSSLSS 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0360 966 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 269 333 IPR000504 GO:0003723
Lele18g0360 966 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 354 419 IPR000504 GO:0003723
Lele18g0360 966 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 267 340 IPR000504 GO:0003723
Lele18g0360 966 Gene3D - 261 343 IPR012677 -
Lele18g0360 966 Pfam RNA recognition motif 2 793 889 IPR007201 -
Lele18g0360 966 SMART rrm1_1 268 336 IPR000504 GO:0003723
Lele18g0360 966 SMART rrm1_1 795 871 IPR000504 GO:0003723
Lele18g0360 966 SMART rrm1_1 353 421 IPR000504 GO:0003723
Lele18g0360 966 CDD RRM1_MEI2_like 266 341 IPR034453 -
Lele18g0360 966 CDD RRM3_MEI2_like 796 881 IPR034454 -
Lele18g0360 966 FunFam MEI2-like protein 5 isoform 2 256 350 - -
Lele18g0360 966 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 352 425 IPR000504 GO:0003723
Lele18g0360 966 SUPERFAMILY RNA-binding domain, RBD 264 426 IPR035979 GO:0003676
Lele18g0360 966 MobiDBLite consensus disorder prediction 929 966 - -
Lele18g0360 966 MobiDBLite consensus disorder prediction 726 750 - -
Lele18g0360 966 FunFam Protein MEI2-like 1 351 445 - -
Lele18g0360 966 MobiDBLite consensus disorder prediction 48 73 - -
Lele18g0360 966 MobiDBLite consensus disorder prediction 906 966 - -
Lele18g0360 966 SUPERFAMILY RNA-binding domain, RBD 795 880 IPR035979 GO:0003676
Lele18g0360 966 Gene3D - 344 430 IPR012677 -
Lele18g0360 966 PANTHER RNA RECOGNITION MOTIF-CONTAINING 77 940 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0360 Lele-ChrLele18 2140034 2146601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0360 262 378 Eukaryotic Initiation Factors Gene Family AT3G16380 26.119 2.69e-07 52.4