Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0355 ATGAAAATTTTGGTCAGATTTATGGATGTTTTCGGCCTAATGATTGTATTATCACTGCTCTGTTCTCTGTCATTCTCGATATTGCGCTTTGATTTTTCAATGGAACGATTGAGTACGGATAAAGCATTAATGAGGTATCTTGTCCTGGATGTTTTGAATGTTGAACGCCTCCATAATGTGTTTTATGTGAGAACTGCACACTTATGGAATGCTTATTTTGAATGGCTGTGGATGCAGCTGCAATGCTTGGAAGAAGGTGTAGATTCATTAAGGGCGAGATGCCAAAAGTTCTACAAAGGATGTCGCAAGTACACGGAAGGTCTTGGAGAGGGATATGATGGGGACATTGCTTTTGCGAGTGCACTTGAAACTTTTGGGGGAGGGCATGGTGATCCTCTTTTTATTGCTTTGGGAGGACCTGTTATGACCAAATTCACCATTGCTTTGAGAGAAATTGGTACCTACAAAGAAGTTCTGCGGTCGCAGGAAGTTCGAAAGCGGTTTGACAAAGCTTCCCTTGCATATGATCAGAGTGGCAATCCACCATCTGGACAGAGAAATAATGCCAATGAAAATGGTTCAGGAATTCTGAGCCGGTGGCTTTCTTCTCATTATCATGGGGGTGTCCATGATGAGCGATCTGTGGCACGTCATGCAGTGAACCTGCTTACATCAACAATTAAGGTTGATGCTGATCAGTCAGATTTAAGATTTTGCTTCCGGATTATTTCACCAGTAAAGAACTATACGTTGCAGGCAGAAAATGCAGTGGACCAGATGGATTGGATTGAAAAAATGACCGGAGTAATTGCTTCCTTGTTGAGTGTCCAGTCAGTAGAAATGCCTCTCACAACTGACTCTGAAAGTGGTGGATGTTCCTCTTCAAGCAATATTGATATACTGGAAAACTTTCAAGACGATATTCAATCAATGAAGTGTGGTAAACCTGAACCAGAATGGGCATCCTTAAACCTTGGTATTCTCATATGCATCGAGTGTTCTGGCATTCATCGTAATCTTGGTGTACATATATCAAAAGTAAGATCACTGACACTTGATGTGAAAGTCTGGGACCCTTCTGTCATAACCATGTTTCAGTCCCTGGGCAATCATTTTGCTAACACAGTTTGGGAAGAGAAGTTGGATTCAGCAAGTAAAATGCAAGCTGCTGACATGACTGTTGAAAACAAATTACTCCGTGTAAGGAAACCAGAGCATGATGATTCTATTTCATTAAAAGAGAGGTTCATTCATGCAAAGTATTCTGAGAAAATCTTTGTCGATCAGATAAAGAATAACAACCATCTCCTTTCAGTGGCACAACAGTTATGGGAAAGCGTCTGTGCCAATGACAAGAAAGCAGCATACCGGCATATTGTGAAGTCTGATTTGGATGTCAATGCTGTCTGTGGGCAAGAATATTTTGATGATGCTTTTGGCATGCCTTCTTCAAGCAATTCAAAATCTTCAGCCAAGAGTGAAAATCAGCCAATAGAGGACATACTTGATGGTTCAACCGTGCTTCACCTGGCATGCCTGACTGCTGACATTGCCATGGTGGAGCTACTCTTACAATATGGCGCAGACATAAATGCTTCCGATTCAAGAGGTCGCTCACCACTGCATTACTCTATCATCAGAGGGAAGAATGCAACTGCAAAATTGCTTGTAATGAGGGGGGCCAATGCACATGCCGCAGATGACGAAGGCAATACTCCTCTTAAACTTGCATCAGAATCCGCTTCTATTAGCAATGATGTTCTCGCTCTCATTACAAGAATATGA 1785 0.4185 MKILVRFMDVFGLMIVLSLLCSLSFSILRFDFSMERLSTDKALMRYLVLDVLNVERLHNVFYVRTAHLWNAYFEWLWMQLQCLEEGVDSLRARCQKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHGDPLFIALGGPVMTKFTIALREIGTYKEVLRSQEVRKRFDKASLAYDQSGNPPSGQRNNANENGSGILSRWLSSHYHGGVHDERSVARHAVNLLTSTIKVDADQSDLRFCFRIISPVKNYTLQAENAVDQMDWIEKMTGVIASLLSVQSVEMPLTTDSESGGCSSSSNIDILENFQDDIQSMKCGKPEPEWASLNLGILICIECSGIHRNLGVHISKVRSLTLDVKVWDPSVITMFQSLGNHFANTVWEEKLDSASKMQAADMTVENKLLRVRKPEHDDSISLKERFIHAKYSEKIFVDQIKNNNHLLSVAQQLWESVCANDKKAAYRHIVKSDLDVNAVCGQEYFDDAFGMPSSSNSKSSAKSENQPIEDILDGSTVLHLACLTADIAMVELLLQYGADINASDSRGRSPLHYSIIRGKNATAKLLVMRGANAHAADDEGNTPLKLASESASISNDVLALITRI 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0355 594 Gene3D Arf GTPase activating protein 293 435 IPR038508 -
Lele18g0355 594 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 283 435 - -
Lele18g0355 594 SUPERFAMILY BAR/IMD domain-like 79 178 IPR027267 -
Lele18g0355 594 Gene3D - 196 280 IPR011993 -
Lele18g0355 594 ProSiteProfiles Ankyrin repeat profile. 536 568 IPR002110 GO:0005515
Lele18g0355 594 Gene3D Arfaptin homology (AH) domain/BAR domain 75 163 IPR027267 -
Lele18g0355 594 PRINTS HIV Rev interacting protein signature 307 326 IPR001164 GO:0005096
Lele18g0355 594 PRINTS HIV Rev interacting protein signature 326 343 IPR001164 GO:0005096
Lele18g0355 594 PRINTS HIV Rev interacting protein signature 349 370 IPR001164 GO:0005096
Lele18g0355 594 Gene3D - 439 592 IPR036770 -
Lele18g0355 594 SUPERFAMILY ArfGap/RecO-like zinc finger 312 428 IPR037278 -
Lele18g0355 594 Pfam Putative GTPase activating protein for Arf 311 428 IPR001164 GO:0005096
Lele18g0355 594 PANTHER CENTAURIN/ARF 79 177 IPR045258 GO:0005096
Lele18g0355 594 Pfam Ankyrin repeats (3 copies) 508 591 IPR002110 GO:0005515
Lele18g0355 594 SMART ANK_2a 503 532 IPR002110 GO:0005515
Lele18g0355 594 SMART ANK_2a 536 565 IPR002110 GO:0005515
Lele18g0355 594 SMART arf_gap_3 302 434 IPR001164 GO:0005096
Lele18g0355 594 SUPERFAMILY PH domain-like 201 275 - -
Lele18g0355 594 ProSiteProfiles Ankyrin repeat region circular profile. 503 534 - -
Lele18g0355 594 SUPERFAMILY Ankyrin repeat 500 580 IPR036770 -
Lele18g0355 594 CDD ArfGap 313 421 - -
Lele18g0355 594 ProSiteProfiles ARF GTPase-activating proteins domain profile. 295 434 IPR001164 GO:0005096
Lele18g0355 594 ProSiteProfiles Ankyrin repeat region circular profile. 536 568 - -
Lele18g0355 594 ProSiteProfiles Ankyrin repeat profile. 503 535 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0355 Lele-ChrLele18 2102523 2112866 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0355 313 428 C2H2 Transcription Factor Family AT3G07940 38.793 1.90e-18 84.0