Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0354 ATGGACGGGACTGGGGGAAGCCACTCATCTGTTTACAACAACCATAACGATGCTTGGAATCCTGCAGAGTGTCAGAATGCTCACTCATCATCAACTGCGAGAGGTGGAGGCGTCCACAAATCAGGTGGTGGACCAGCAGATGCCTGTGTACGATCTCCCATCGAAAATCCTTTGTCGAGTGATCAACGTCCTGTTGAAGGTAGCTTTGTTCTATCTCTAACAGTTTATATATTTCGAAGCTTTCAAACCAAAGCTGAGCCGGACACCGATGAGGTGTTTGCCCAGTTGACCTTGCTTCCGGAGCCAAATGATATGTCGAAGCAGCCACCTAACCAGGAGTTGGTGGCGAAGGATCTACACGGTAACGAGGGTGAGAATGGGGAACTTCGTGTTGGTGTAAGGCGTGCAATGAGACAGCAGGGTAATGTTCCGTCCTCAGTGATCTCTTGTCACAGCATGCATCTTGGTGTCCTTGCAACTGCCTGGCATGCGGTTTCGACTGGGACCATGTTCACTGTGTATTACAAGCCCAGGACCAGTCCTGCTGAATTTATTGTTCCATACGAACAGTATATGGAGTGTCTAAAAAATAACTATACAATAGGAATGCGGTTCAAAATGAGGTTTGAAGGTGAAGAGGCTCCAGAGCAGAGGCTTACTGGTACTGTTATTGGACTTGAAGATGCTGATACACAAAGGTGGCCGAAATCCAAATGGAGATGCCTCAAGGTGAGATGGGATGAAACATCTAGCATTCCTCGTCCTGAGAGAGTTTCCCCTTGGAAAATAGAACCTGCTCATGCTCCTCCAGCTCTAAATCCTCTTACACCGGCCAGGCCTAAAAGGCCCCGGTGTAATGCGGTTCCATCATCACCCGATTCCTCTGTTCTTACTCGTGAAGCGTCATCCAAGTTAAGTATAGACCCTCTGCAAGCAAGTGAATTTGCAAGGGTATGGCAAGGTCAAGAATTCTCGACCTCGAGAGGCAATTTGGCTGAAAGCTATGAATTTGATACTGCTGAGAAGCCTGATGAAAAAAATTATGCAGTGTCTACTTCAAGTACGTTTGCTCCAGAGAACTGGACAGCAATGGGGAGGCATGAGCCTACATATTCAGATTTGCTTAAAGGCTTTGGGACAAGTGGAGATCGAGCCCATTTATCTTTGGTACATCAAACTAGCCCTGTGGCTAGTCCTGGAAGAAAACATGTGTTAGGTCATGAAGGGCAGTTTAAGATGGTAGCCTGCCCAAGGTCTGTAATGCCTTCTAATCTGTCATTAAACCTCTCGGATCCTAATATGAAAGGTTCTGCACAAGACAGTGATGTAGCTTACCATACTAGGCGGAATGTGAGGTATGGTGCATTTGGTGATTACCCTGTGCTTCATGGTCACAAAGAAGAGCATAGGCATGGAAGCCTGTTGATGCCACCGCCTCCACCCCCAACTCAGCATGATAGTCCTGGATCAAGAGGCCTGATGCAAAAACAAATGCCGGCAAGATCATACGAGACTGTTAAAGCTAAAGAAGGGGACTGTAAGCTATTTGGCATCTCACTTATCAGTAGCCCAAGTACACCAGAGCCTTCCACATCAAAAATAAATGTGGCGTGTACACCAGCTGGTCACAAGCATCTTACATCTCAACGGCCTTATAGTAATGAAAGTGATTTGAAATCAGAACAATCAAGCGGACCGAAGCTGCCAGATGCTGTAGTTGCTACTGATTACCAAGAAAAGCCATCACAAACATCTCAACCACATATGAAAGGTGTTCAAGCCAAATCACGCAGTGATTCTGCTAGGAGTTGCACTAAAGTTCACAAGAAGGGGATTGCGCTTGGTAGATCAGTTGACCTTACAAAGTTCAGCAACTATGATGCATTAGTTGCTGAATTAGATGAATTGTTTGAATTTGGAGGGGAATTAAAGTCTTTGAAAAAGGATTGGCTTATCGTCTACACTGATAATGAGGGTGACATGATGCTTGTTGGGGATGACCCATGGCAAGTCTGTCGGCTAGTGAAGGAGTGGATGCTAAAGAAGTCTAATTTCAGCTTCATGATGATTAAATTTGATCCCATAGATTCCAGCTTCGCTCTAGAGAAGCAGGAGATTCTATAA 2124 0.4562 MDGTGGSHSSVYNNHNDAWNPAECQNAHSSSTARGGGVHKSGGGPADACVRSPIENPLSSDQRPVEGSFVLSLTVYIFRSFQTKAEPDTDEVFAQLTLLPEPNDMSKQPPNQELVAKDLHGNEGENGELRVGVRRAMRQQGNVPSSVISCHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPAEFIVPYEQYMECLKNNYTIGMRFKMRFEGEEAPEQRLTGTVIGLEDADTQRWPKSKWRCLKVRWDETSSIPRPERVSPWKIEPAHAPPALNPLTPARPKRPRCNAVPSSPDSSVLTREASSKLSIDPLQASEFARVWQGQEFSTSRGNLAESYEFDTAEKPDEKNYAVSTSSTFAPENWTAMGRHEPTYSDLLKGFGTSGDRAHLSLVHQTSPVASPGRKHVLGHEGQFKMVACPRSVMPSNLSLNLSDPNMKGSAQDSDVAYHTRRNVRYGAFGDYPVLHGHKEEHRHGSLLMPPPPPPTQHDSPGSRGLMQKQMPARSYETVKAKEGDCKLFGISLISSPSTPEPSTSKINVACTPAGHKHLTSQRPYSNESDLKSEQSSGPKLPDAVVATDYQEKPSQTSQPHMKGVQAKSRSDSARSCTKVHKKGIALGRSVDLTKFSNYDALVAELDELFEFGGELKSLKKDWLIVYTDNEGDMMLVGDDPWQVCRLVKEWMLKKSNFSFMMIKFDPIDSSFALEKQEIL 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0354 707 ProSiteProfiles PB1 domain profile. 602 683 IPR000270 GO:0005515
Lele18g0354 707 Pfam AUX/IAA family 588 671 IPR033389 -
Lele18g0354 707 Gene3D - 597 688 - -
Lele18g0354 707 MobiDBLite consensus disorder prediction 577 600 - -
Lele18g0354 707 MobiDBLite consensus disorder prediction 264 300 - -
Lele18g0354 707 SUPERFAMILY CAD & PB1 domains 604 672 - -
Lele18g0354 707 MobiDBLite consensus disorder prediction 546 563 - -
Lele18g0354 707 MobiDBLite consensus disorder prediction 467 497 - -
Lele18g0354 707 Pfam Auxin response factor 161 243 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lele18g0354 707 MobiDBLite consensus disorder prediction 22 63 - -
Lele18g0354 707 MobiDBLite consensus disorder prediction 22 36 - -
Lele18g0354 707 FunFam Auxin response factor 198 270 - -
Lele18g0354 707 MobiDBLite consensus disorder prediction 541 600 - -
Lele18g0354 707 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 125 678 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lele18g0354 707 Gene3D - 198 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0354 Lele-ChrLele18 2082292 2087169 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0354 84 680 B3 DNA Binding Superfamily AT5G62000 48.942 0.0 595